Metabolomics Standards Workshop and the development of international standards for reporting metabolomics experimental results

被引:64
作者
Castle, Arthur L.
Fiehn, Oliver
Kaddurah-Daouk, Rima
Lindon, John C.
机构
[1] NIDDK, NIH, Bethesda, MD 20892 USA
[2] Univ Calif Davis, Gen Ctr, Davis, CA USA
[3] Duke Univ, Med Ctr, Durham, NC 27706 USA
[4] Univ London Imperial Coll Sci Technol & Med, Div Biomed Sci, Biol Chem Sect, London, England
关键词
metabolomics; metabonomics; minimum information standards; metabolic profiling;
D O I
10.1093/bib/bbl008
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Informatics standards and controlled vocabularies are essential for allowing information technology to help exchange, manage, interpret and compare large data collections. In a rapidly evolving field, the challenge is to work out how best to describe, but not prescribe, the use of these technologies and methods. A Metabolomics Standards Workshop was held by the US National Institutes of Health (NIH) to bring together multiple ongoing standards efforts in metabolomics with the NIH research community. The goals were to discuss metabolomics workflows (methods, technologies and data treatments) and the needs, challenges and potential approaches to developing a Metabolomics Standards Initiative that will help facilitate this rapidly growing field which has been a focus of the NIH roadmap effort. This report highlights specific aspects of what was presented and discussed at the 1st and 2nd August 2005 Metabolomics Standards Workshop.
引用
收藏
页码:159 / 165
页数:7
相关论文
共 60 条
[1]   Data management and preliminary data analysis in the pilot phase of the HUPO Plasma Proteome Project [J].
Adamski, M ;
Blackwell, T ;
Menon, R ;
Martens, L ;
Hermjakob, H ;
Taylor, C ;
Omenn, GS ;
States, DJ .
PROTEOMICS, 2005, 5 (13) :3246-3261
[2]  
*AIST NI, SPECTR DAT ORG COMP
[3]  
*AM AC FOR SCI TOX, MASS SPECTR DAT COMM
[4]   Potential of metabolomics as a functional genomics tool [J].
Bino, RJ ;
Hall, RD ;
Fiehn, O ;
Kopka, J ;
Saito, K ;
Draper, J ;
Nikolau, BJ ;
Mendes, P ;
Roessner-Tunali, U ;
Beale, MH ;
Trethewey, RN ;
Lange, BM ;
Wurtele, ES ;
Sumner, LW .
TRENDS IN PLANT SCIENCE, 2004, 9 (09) :418-425
[5]   Metabolome analysis:: the potential of in vivo labeling with stable isotopes for metabolite profiling [J].
Birkemeyer, C ;
Luedemann, A ;
Wagner, C ;
Erban, A ;
Kopka, J .
TRENDS IN BIOTECHNOLOGY, 2005, 23 (01) :28-33
[6]   NMR-based metabonomic approaches for evaluating physiological influences on biofluid composition [J].
Bollard, ME ;
Stanley, EG ;
Lindon, JC ;
Nicholson, JK ;
Holmes, E .
NMR IN BIOMEDICINE, 2005, 18 (03) :143-162
[7]   Minimum information about a microarray experiment (MIAME) - toward standards for microarray data [J].
Brazma, A ;
Hingamp, P ;
Quackenbush, J ;
Sherlock, G ;
Spellman, P ;
Stoeckert, C ;
Aach, J ;
Ansorge, W ;
Ball, CA ;
Causton, HC ;
Gaasterland, T ;
Glenisson, P ;
Holstege, FCP ;
Kim, IF ;
Markowitz, V ;
Matese, JC ;
Parkinson, H ;
Robinson, A ;
Sarkans, U ;
Schulze-Kremer, S ;
Stewart, J ;
Taylor, R ;
Vilo, J ;
Vingron, M .
NATURE GENETICS, 2001, 29 (04) :365-371
[8]   Applications of mass isotopomer analysis to nutrition research [J].
Brunengraber, H ;
Kelleher, JK ;
DesRosiers, C .
ANNUAL REVIEW OF NUTRITION, 1997, 17 :559-596
[9]   Statistical total correlation spectroscopy:: An exploratory approach for latent biomarker identification from metabolic 1H NMR data sets [J].
Cloarec, O ;
Dumas, ME ;
Craig, A ;
Barton, RH ;
Trygg, J ;
Hudson, J ;
Blancher, C ;
Gauguier, D ;
Lindon, JC ;
Holmes, E ;
Nicholson, J .
ANALYTICAL CHEMISTRY, 2005, 77 (05) :1282-1289
[10]  
*COLD SPRING HARB, REACT CUR KNOWL BAS