Intermolecular vibrations of jet-cooled (2-pyridone)2:: A model for the uracil dimer

被引:77
作者
Müller, A [1 ]
Talbot, F [1 ]
Leutwyler, S [1 ]
机构
[1] Univ Bern, Dept Chem & Biochem, CH-3000 Bern 9, Switzerland
关键词
D O I
10.1063/1.480524
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The 2-pyridone dimer, (2PY)(2), which is linked by two antiparallel N-H ... O hydrogen bonds, is a model for hydrogen bonded nucleotide base pairs, e.g., the uracil dimer. Mass- and isomer-selected S-2<-- S-0 vibronic spectra of supersonically cooled (2PY)(2) were measured by laser two-color resonant two-photon ionization and UV/UV-holeburning techniques. The latter allows the identification of the spectrum of the 2-pyridone.2-hydroxypyridine mixed dimer, present at approximate to 5% relative concentration. S-2--> S-0 fluorescence emission spectra show dominantly the hydrogen bond shearing vibration nu(4)" at 98.5 cm(-1) and the stretching vibration nu(6)" at 163.5 cm(-1). The hydrogen bond stretching vibration force constant was determined to be 75.4 N/m, or 37.7 N/m per hydrogen bond, a very high value. The nu(2)" (a(u)) torsional and the nu(3)" (b(u)) slanting vibrations were also identified. Ground state structures, rotational constants, harmonic intermolecular and intramolecular vibrational frequencies, interaction, and dissociation energies were calculated using Hartree-Fock and density functional (B3LYP) methods. The B3LYP/6-311++(2d,2p) results are in excellent agreement with all experimental observations. (C) 2000 American Institute of Physics. [S0021-9606(00)00607-3].
引用
收藏
页码:3717 / 3725
页数:9
相关论文
共 26 条
[1]  
[Anonymous], UNPUB
[2]   Water-chain clusters:: vibronic spectra of 7-hydroxyquinoline•(H2O)n, n = 1-4 [J].
Bach, A ;
Leutwyler, S .
CHEMICAL PHYSICS LETTERS, 1999, 299 (05) :381-388
[3]  
BAEYENDS KJ, 1995, NAT STRUCT BIOL, V2, P52
[4]   CALCULATION OF SMALL MOLECULAR INTERACTIONS BY DIFFERENCES OF SEPARATE TOTAL ENERGIES - SOME PROCEDURES WITH REDUCED ERRORS [J].
BOYS, SF ;
BERNARDI, F .
MOLECULAR PHYSICS, 1970, 19 (04) :553-&
[5]   THE ELECTRONIC-SPECTRA OF THE PYRIMIDINE-BASES URACIL AND THYMINE IN A SUPERSONIC MOLECULAR-BEAM [J].
BRADY, BB ;
PETEANU, LA ;
LEVY, DH .
CHEMICAL PHYSICS LETTERS, 1988, 147 (06) :538-543
[6]   REPRESENTATION OF THE SECONDARY AND TERTIARY STRUCTURE OF GROUP-I INTRONS [J].
CECH, TR ;
DAMBERGER, SH ;
GUTELL, RR .
NATURE STRUCTURAL BIOLOGY, 1994, 1 (05) :273-280
[7]   Conjugated dual hydrogen bonds mediating 2-pyridone/2-hydroxypyridine tautomerism [J].
Chou, PT ;
Wei, CY ;
Hung, FT .
JOURNAL OF PHYSICAL CHEMISTRY B, 1997, 101 (44) :9119-9126
[8]  
FIELD MJ, 1988, J CHEM SOC P2, P4127
[9]  
Frisch M.J., 1995, GAUSSIAN 94
[10]   ELECTRONIC-SPECTRA OF URACIL IN A SUPERSONIC JET [J].
FUJII, M ;
TAMURA, T ;
MIKAMI, N ;
ITO, M .
CHEMICAL PHYSICS LETTERS, 1986, 126 (06) :583-587