Well-Tempered Metadynamics Converges Asymptotically

被引:243
作者
Dama, James F. [1 ,2 ]
Parrinello, Michele [3 ,4 ]
Voth, Gregory A. [1 ,2 ]
机构
[1] Univ Chicago, Dept Chem, James Franck Inst, Inst Biophys Dynam, Chicago, IL 60637 USA
[2] Univ Chicago, Computat Inst, Chicago, IL 60637 USA
[3] Univ Italiana, ETH Zurich, Dept Chem & Appl Biosci, CH-6900 Lugano, Switzerland
[4] Univ Italiana, Fac Informat, Ist Sci Computaz, CH-6900 Lugano, Switzerland
基金
美国国家科学基金会;
关键词
MOLECULAR-DYNAMICS SIMULATIONS; FREE-ENERGIES; RANDOM-WALK; EFFICIENT; ALGORITHM; ENSEMBLE; STATES; FORCE; PHASE; BIAS;
D O I
10.1103/PhysRevLett.112.240602
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
Metadynamics is a versatile and capable enhanced sampling method for the computational study of soft matter materials and biomolecular systems. However, over a decade of application and several attempts to give this adaptive umbrella sampling method a firm theoretical grounding prove that a rigorous convergence analysis is elusive. This Letter describes such an analysis, demonstrating that well-tempered metadynamics converges to the final state it was designed to reach and, therefore, that the simple formulas currently used to interpret the final converged state of tempered metadynamics are correct and exact. The results do not rely on any assumption that the collective variable dynamics are effectively Brownian or any idealizations of the hill deposition function; instead, they suggest new, more permissive criteria for the method to be well behaved. The results apply to tempered metadynamics with or without adaptive Gaussians or boundary corrections and whether the bias is stored approximately on a grid or exactly.
引用
收藏
页数:6
相关论文
共 51 条
[1]   Determination of solvation free energies by adaptive expanded ensemble molecular dynamics [J].
Åberg, KM ;
Lyubartsev, AP ;
Jacobsson, SP ;
Laaksonen, A .
JOURNAL OF CHEMICAL PHYSICS, 2004, 120 (08) :3770-3776
[2]  
[Anonymous], 1997, STOCHASTIC APPROXIMA, DOI DOI 10.1007/978-1-4899-2696-8
[3]  
[Anonymous], 12076880 ARXIV
[4]  
Atchadé YF, 2010, STAT SINICA, V20, P209
[5]   Multidimensional View of Amyloid Fibril Nucleation in Atomistic Detail [J].
Baftizadeh, Fahimeh ;
Biarnes, Xevi ;
Pietrucci, Fabio ;
Affinito, Fabio ;
Laio, Alessandro .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2012, 134 (08) :3886-3894
[6]   Metadynamics [J].
Barducci, Alessandro ;
Bonomi, Massimiliano ;
Parrinello, Michele .
WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE, 2011, 1 (05) :826-843
[7]   Well-tempered metadynamics: A smoothly converging and tunable free-energy method [J].
Barducci, Alessandro ;
Bussi, Giovanni ;
Parrinello, Michele .
PHYSICAL REVIEW LETTERS, 2008, 100 (02)
[8]  
Bartels C, 1997, J COMPUT CHEM, V18, P1450, DOI 10.1002/(SICI)1096-987X(199709)18:12<1450::AID-JCC3>3.0.CO
[9]  
2-I
[10]   Fast algorithm to calculate density of states [J].
Belardinelli, R. E. ;
Pereyra, V. D. .
PHYSICAL REVIEW E, 2007, 75 (04)