NeuroML for plug and play neuronal modeling

被引:3
作者
Goddard, NH
Beeman, D
Cannon, R
Cornelis, H
Gewaltig, MO
Hood, G
Howell, F
Rogister, P
De Schutter, E
Shankar, K
Hucka, M
机构
[1] Univ Edinburgh, Inst Adapt & Neural Computat, Div Informat, Edinburgh EH1 2QL, Midlothian, Scotland
[2] CALTECH, Pasadena, CA 91125 USA
[3] Born Bunge Fdn, Antwerp, Belgium
[4] Carnegie Mellon Univ, Pittsburg Supercomp Ctr, Pittsburgh, PA 15213 USA
基金
美国国家卫生研究院;
关键词
collaborative tools; simulation; database; NeuroML;
D O I
10.1016/S0925-2312(02)00420-4
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Modern software systems for simulation, database access, visualisation and data analysis, supporting distributed, extensible, evolutionary development, are designed around a small core that loads plug-in components. We have designed such a system for the neurosciences using an XML-based protocol, NeuroML, to exchange information between components. NeuroML supports high-level descriptions of data. models, references, and other types of information. We have built simulation kernel plug-ins, visualisation plug-ins, and model-description GUI plug-ins which interoperate in this framework. We describe the current status of these plug-ins and our future plans for further plug-in components. (C) 2002 Published by Elsevier Science B.V.
引用
收藏
页码:1077 / 1081
页数:5
相关论文
共 9 条
[1]  
BEEMAN D, 1996, PROGR NEUROINFORMATI
[2]  
BOSAK J, 1999, XML 2 GENERATION WEB
[3]  
Bower J. M, 1998, BOOK GENESIS EXPLORI, DOI DOI 10.1007/978-1-4612-1634-63
[4]   Dynamic publication model for neurophysiology databases [J].
Gardner, D ;
Abato, M ;
Knuth, KH ;
DeBellis, R ;
Erde, SM .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2001, 356 (1412) :1229-1247
[5]  
GODDARD N, 2001, NEOSIM PORTABLE LARG
[6]   Towards NeuroML: Model description methods for collaborative modelling in neuroscience [J].
Goddard, NH ;
Hucka, M ;
Howell, F ;
Cornelis, H ;
Shankar, K ;
Beeman, D .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES, 2001, 356 (1412) :1209-1228
[7]   The NEURON simulation environment [J].
Hines, ML ;
Carnevale, NT .
NEURAL COMPUTATION, 1997, 9 (06) :1179-1209
[8]  
HUCKA M, 2000, UNPUB MODELERS WORKS
[9]  
Thompson H. S., 2000, XML SCHEMA 1