An NMR experiment for the accurate measurement of heteronuclear spin-lock relaxation rates

被引:124
作者
Korzhnev, DM
Skrynnikov, NR
Millet, O
Torchia, DA
Kay, LE [1 ]
机构
[1] Univ Toronto, Prot Engn Network Ctr Excellence, Toronto, ON M5S 1A8, Canada
[2] Univ Toronto, Dept Med Genet, Toronto, ON M5S 1A8, Canada
[3] Univ Toronto, Dept Biochem, Toronto, ON M5S 1A8, Canada
[4] Univ Toronto, Dept Chem, Toronto, ON M5S 1A8, Canada
[5] Natl Inst Dent & Craniofacial Res, Struct Mol Biol Unit, NIH, Bethesda, MD 20892 USA
关键词
D O I
10.1021/ja0204776
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Rotating-frame relaxation rates, R-1rho, are often measured in NMR studies of protein dynamics. We show here that large systematic errors can be introduced into measured values of heteronuclear R-1rho rates using schemes which are usually employed to suppress cross-correlation between dipole-dipole and CSA relaxation mechanisms. For example, in a scalar-coupled two-spin X-H spin system the use of H-1 WALTZ16 decoupling or H-1 pulses applied at regularly spaced intervals leads to a significant overestimation of heteronuclear R-1rho values. The problem is studied experimentally and theoretically for N-15-H-1 and C-13-H-1 spin pairs, and simple schemes are described which eliminate the artifacts. The approaches suggested are essential replacements of existing methodology if accurate dynamics parameters are to be extracted from spin-lock relaxation data sets.
引用
收藏
页码:10743 / 10753
页数:11
相关论文
共 54 条
[1]   Monitoring macromolecular motions on microsecond to millisecond time scales by R(1)rho-R(1) constant relaxation time NMR spectroscopy [J].
Akke, M ;
Palmer, AG .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1996, 118 (04) :911-912
[2]   H-1 and N-15 NMR assignment and solution structure of the SH3 domain of spectrin: Comparison of unrefined and refined structure sets with the crystal structure [J].
Blanco, FJ ;
Ortiz, AR ;
Serrano, L .
JOURNAL OF BIOMOLECULAR NMR, 1997, 9 (04) :347-357
[3]   INFLUENCE OF CROSS-CORRELATION BETWEEN DIPOLAR AND ANISOTROPIC CHEMICAL-SHIFT RELAXATION MECHANISMS UPON LONGITUDINAL RELAXATION RATES OF N-15 IN MACROMOLECULES [J].
BOYD, J ;
HOMMEL, U ;
CAMPBELL, ID .
CHEMICAL PHYSICS LETTERS, 1990, 175 (05) :477-482
[4]   Study of dynamic processes in liquids using off-resonance rf irradiation [J].
Desvaux, H ;
Berthault, P .
PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY, 1999, 35 (04) :295-340
[5]  
ELLIOTT JP, 1979, SYMMETRY PHYSICS, V2
[6]  
Ernst R. R., 1987, PRINCIPLES NUCL MAGN
[8]   BACKBONE DYNAMICS OF A FREE AND A PHOSPHOPEPTIDE-COMPLEXED SRC HOMOLOGY-2 DOMAIN STUDIED BY N-15 NMR RELAXATION [J].
FARROW, NA ;
MUHANDIRAM, R ;
SINGER, AU ;
PASCAL, SM ;
KAY, CM ;
GISH, G ;
SHOELSON, SE ;
PAWSON, T ;
FORMANKAY, JD ;
KAY, LE .
BIOCHEMISTRY, 1994, 33 (19) :5984-6003
[9]   INTERFERENCE EFFECTS IN THE RELAXATION OF A PAIR OF UNLIKE SPIN-1/2 NUCLEI [J].
GOLDMAN, M .
JOURNAL OF MAGNETIC RESONANCE, 1984, 60 (03) :437-452
[10]   CROSS RELAXATION IN TIME-DEPENDENT NUCLEAR-SPIN SYSTEMS - INVARIANT TRAJECTORY APPROACH [J].
GRIESINGER, C ;
ERNST, RR .
CHEMICAL PHYSICS LETTERS, 1988, 152 (2-3) :239-247