Regulation of mammalian transcription and splicing by Nuclear RNAi

被引:86
作者
Kalantari, Roya [1 ,2 ]
Chiang, Cheng-Ming [1 ,2 ,3 ]
Corey, David R. [1 ,2 ]
机构
[1] Univ Texas SW Med Ctr Dallas, Dept Pharmacol, 6001 Forest Pk Rd, Dallas, TX 75390 USA
[2] Univ Texas SW Med Ctr Dallas, Dept Biochem, 6001 Forest Pk Rd, Dallas, TX 75390 USA
[3] Univ Texas SW Med Ctr Dallas, Simmons Comprehens Canc Ctr, 6001 Forest Pk Rd, Dallas, TX 75390 USA
基金
美国国家卫生研究院;
关键词
SMALL INTERFERING RNA; DOUBLE-STRANDED-RNA; BLADDER-CANCER CELLS; DNA-DAMAGE RESPONSE; LONG NONCODING RNA; GENE-EXPRESSION; ARGONAUTE PROTEINS; UP-REGULATION; HETEROCHROMATIN FORMATION; CAENORHABDITIS-ELEGANS;
D O I
10.1093/nar/gkv1305
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
RNA interference (RNAi) is well known as a mechanism for controlling mammalian mRNA translation in the cytoplasm, but what would be the consequences if it also functions in cell nuclei? Although RNAi has also been found in nuclei of plants, yeast, and other organisms, there has been relatively little progress towards understanding the potential involvement of mammalian RNAi factors in nuclear processes including transcription and splicing. This review summarizes evidence for mammalian RNAi factors in cell nuclei and mechanisms that might contribute to the control of gene expression. When RNAi factors bind small RNAs, they form ribonucleoprotein complexes that can be selective for target sequences within different classes of nuclear RNA substrates. The versatility of nuclear RNAi may supply a previously underappreciated layer of regulation to transcription, splicing, and other nuclear processes.
引用
收藏
页码:524 / 537
页数:14
相关论文
共 197 条
[1]
Therapeutic antisense-induced exon skipping in cultured muscle cells from six different DMD patients [J].
Aartsma-Rus, A ;
Janson, AAM ;
Kaman, WE ;
Bremmer-Bout, M ;
den Dunnen, JT ;
Baas, F ;
van Ommen, GJB ;
van Deutekom, JCT .
HUMAN MOLECULAR GENETICS, 2003, 12 (08) :907-914
[2]
Ordered recruitment of chromatin modifying and general transcription factors to the IFN-β promoter [J].
Agalioti, T ;
Lomvardas, S ;
Parekh, B ;
Yie, JM ;
Maniatis, T ;
Thanos, D .
CELL, 2000, 103 (04) :667-678
[3]
A chromatin code for alternative splicing involving a putative association between CTCF and HP1α proteins [J].
Agirre, Eneritz ;
Bellora, Nicolas ;
Allo, Mariano ;
Pages, Amadis ;
Bertucci, Paola ;
Kornblihtt, Alberto R. ;
Eyras, Eduardo .
BMC BIOLOGY, 2015, 13
[4]
Argonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells [J].
Allo, Mariano ;
Agirre, Eneritz ;
Bessonov, Sergey ;
Bertucci, Paola ;
Gomez Acuna, Luciana ;
Buggiano, Valeria ;
Bellora, Nicolas ;
Singh, Babita ;
Petrillo, Ezequiel ;
Blaustein, Matias ;
Minana, Belen ;
Dujardin, Gwendal ;
Pozzi, Berta ;
Pelisch, Federico ;
Bechara, Elias ;
Agafonov, Dmitry E. ;
Srebrow, Anabella ;
Luehrmann, Reinhard ;
Valcarcel, Juan ;
Eyras, Eduardo ;
Kornblihtt, Alberto R. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (44) :15622-15629
[5]
Control of alternative splicing through siRNA-mediated transcriptional gene silencing [J].
Allo, Mariano ;
Buggiano, Valeria ;
Fededa, Juan P. ;
Petrillo, Ezequiel ;
Schor, Ignacio ;
de la Mata, Manuel ;
Agirre, Eneritz ;
Plass, Mireya ;
Eyras, Eduardo ;
Abou Elela, Sherif ;
Klinck, Roscoe ;
Chabot, Benoit ;
Kornblihtt, Alberto R. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2009, 16 (07) :717-U43
[6]
Argonaute proteins couple chromatin silencing to alternative splicing [J].
Ameyar-Zazoua, Maya ;
Rachez, Christophe ;
Souidi, Mouloud ;
Robin, Philippe ;
Fritsch, Lauriane ;
Young, Robert ;
Morozova, Nadya ;
Fenouil, Romain ;
Descostes, Nicolas ;
Andrau, Jean-Christophe ;
Mathieu, Jacques ;
Hamiche, Ali ;
Ait-Si-Ali, Slimane ;
Muchardt, Christian ;
Batsche, Eric ;
Harel-Bellan, Annick .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2012, 19 (10) :998-U46
[7]
[Anonymous], 2003, NAT CELL BIOL, V5, P489, DOI DOI 10.1038/NCB0603-490
[8]
Comparative analysis of antisense oligonucleotide sequences for targeted skipping of Exon 51 during dystrophin Pre-mRNA splicing in human muscle [J].
Arechavala-Gomeza, V. ;
Graham, I. R. ;
Popplewell, L. J. ;
Adams, A. M. ;
Aartsma-Rus, A. ;
Kinali, M. ;
Morgan, J. E. ;
Van Deutekom, J. C. ;
Wilton, S. D. ;
Dickson, G. ;
Muntoni, F. .
HUMAN GENE THERAPY, 2007, 18 (09) :798-810
[9]
Considerations when investigating IncRNA function in vivo [J].
Bassett, Andrew R. ;
Akhtar, Asifa ;
Barlow, Denise P. ;
Bird, Adrian P. ;
Brockdorff, Neil ;
Duboule, Denis ;
Ephrussi, Anne ;
Ferguson-Smith, Anne C. ;
Gingeras, Thomas R. ;
Haerty, Wilfried ;
Higgs, Douglas R. ;
Miska, Eric A. ;
Ponting, Chris P. .
ELIFE, 2014, 3 :1-14
[10]
The influence of Argonaute proteins on alternative RNA splicing [J].
Batsche, Eric ;
Ameyar-Zazoua, Maya .
WILEY INTERDISCIPLINARY REVIEWS-RNA, 2015, 6 (01) :141-156