Automated subcellular location determination and high-throughput microscopy

被引:258
作者
Glory, Estelle
Murphy, Robert F.
机构
[1] Carnegie Mellon Univ, Ctr Bioimage Informat, Pittsburgh, PA 15213 USA
[2] Carnegie Mellon Univ, Mol Biosensor & Imaging Ctr, Pittsburgh, PA 15213 USA
[3] Carnegie Mellon Univ, Dept Biol Sci, Pittsburgh, PA 15213 USA
[4] Carnegie Mellon Univ, Dept Biomed Engn & Machine Learning, Pittsburgh, PA 15213 USA
关键词
PROTEIN LOCALIZATION; FLUORESCENCE MICROSCOPY; PATTERNS; CLASSIFICATION; RECOGNITION; CELLS; SEGMENTATION; PROTEOMICS; TRACKING; IMAGES;
D O I
10.1016/j.devcel.2006.12.007
中图分类号
Q2 [细胞生物学];
学科分类号
071013 [干细胞生物学];
摘要
Dramatic advances in methods for protein tagging and the development of fully automated microscopes enable collection of unprecedented volumes of image data on the subcellular location of proteins in live cells. Combining these approaches with machine learning methods promises to provide systematic, high-resolution pattern information on a proteome-wide basis. © 2007 Elsevier Inc. All rights reserved.
引用
收藏
页码:7 / 16
页数:10
相关论文
共 65 条
[1]
High-throughput analysis of multispectral images of breast cancer tissue [J].
Adiga, Umesh ;
Malladi, Ravikanth ;
Fernandez-Gonzalez, Rodrigo ;
de Solorzano, Carlos Ortiz .
IEEE TRANSACTIONS ON IMAGE PROCESSING, 2006, 15 (08) :2259-2268
[2]
Imaging intracellular fluorescent proteins at nanometer resolution [J].
Betzig, Eric ;
Patterson, George H. ;
Sougrat, Rachid ;
Lindwasser, O. Wolf ;
Olenych, Scott ;
Bonifacino, Juan S. ;
Davidson, Michael W. ;
Lippincott-Schwartz, Jennifer ;
Hess, Harald F. .
SCIENCE, 2006, 313 (5793) :1642-1645
[3]
Boland MV, 1998, CYTOMETRY, V33, P366
[4]
Boland MV, 1997, P ANN INT IEEE EMBS, V19, P594, DOI 10.1109/IEMBS.1997.757680
[5]
A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells [J].
Boland, MV ;
Murphy, RF .
BIOINFORMATICS, 2001, 17 (12) :1213-1223
[6]
Bouthemy P, 1998, INT C PATT RECOG, P905, DOI 10.1109/ICPR.1998.711298
[7]
Automated subcellular localization and quantification of protein expression in tissue microarrays [J].
Camp, RL ;
Chung, GG ;
Rimm, DL .
NATURE MEDICINE, 2002, 8 (11) :1323-1327
[8]
CellProfiler: image analysis software for identifying and quantifying cell phenotypes [J].
Carpenter, Anne E. ;
Jones, Thouis Ray ;
Lamprecht, Michael R. ;
Clarke, Colin ;
Kang, In Han ;
Friman, Ola ;
Guertin, David A. ;
Chang, Joo Han ;
Lindquist, Robert A. ;
Moffat, Jason ;
Golland, Polina ;
Sabatini, David M. .
GENOME BIOLOGY, 2006, 7 (10)
[9]
CHEN SC, 2006, 2005 IEEE S COMP INT, P1079
[10]
Objective clustering of proteins based on subcellular location patterns [J].
Chen, X ;
Murphy, RF .
JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY, 2005, (02) :87-95