Repetitive element PCR fingerprinting (rep-PCR) using enterobacterial repetitive intergenic consensus (ERIC) primers is not necessarily directed at ERIC elements

被引:97
作者
Gillings, M
Holley, M
机构
[1] Key Ctr. Biodiv. and Bioresources, School of Biological Sciences, Macquarie University, Sydney, NSW
[2] Key Ctr. Biodiv. and Bioresources, Macquarie University, Sydney
关键词
D O I
10.1046/j.1472-765X.1997.00162.x
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
We examined the use of enterobacterial repetitive intergenic consensus (ERIC) sequences in PCR on the DNAs of various bacteria, bacteriophage, invertebrates, fungi, plants and vertebrates and have shown that complex ERIC-PCR patterns can be readily produced from all of these target organisms. A range of annealing temperatures was tested, from 52 degrees C (the commonly used annealing temperature) to 66 degrees C (the approximate T-m of ERIC primers). At the higher temperatures, most bands failed to amplify, the exception being a subset of bands from enterobacterial targets. It was concluded that ERIC-PCR does not necessarily direct amplification from genuine ERIC sequences.
引用
收藏
页码:17 / 21
页数:5
相关论文
共 21 条
[1]  
[Anonymous], 1990, PCR protocols: a guide to methods and applications, DOI [10.1016/B978-0-12-372180-8.50038-X, DOI 10.1016/B978-0-12-372180-8.50038-X]
[2]  
Caetano-anolles G., 1992, Plant Mol. Biol. Rep, V9, P294
[3]   USE OF REPETITIVE (REPETITIVE EXTRAGENIC PALINDROMIC AND ENTEROBACTERIAL REPETITIVE INTERGENERIC CONSENSUS) SEQUENCES AND THE POLYMERASE CHAIN-REACTION TO FINGERPRINT THE GENOMES OF RHIZOBIUM-MELILOTI ISOLATES AND OTHER SOIL BACTERIA [J].
DEBRUIJN, FJ .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1992, 58 (07) :2180-2187
[4]   MOLECULAR GENOTYPING OF METHICILLIN-RESISTANT STAPHYLOCOCCUS-AUREUS VIA FLUOROPHORE-ENHANCED REPETITIVE-SEQUENCE PCR [J].
DELVECCHIO, VG ;
PETROZIELLO, JM ;
GRESS, MJ ;
MCCLESKEY, FK ;
MELCHER, GP ;
CROUCH, HK ;
LUPSKI, JR .
JOURNAL OF CLINICAL MICROBIOLOGY, 1995, 33 (08) :2141-2144
[5]   COMPARISON OF 3 MOLECULAR METHODS FOR THE CHARACTERIZATION OF FUSARIUM-OXYSPORUM STRAINS [J].
EDEL, V ;
STEINBERG, C ;
AVELANGE, I ;
LAGUERRE, G ;
ALABOUVETTE, C .
PHYTOPATHOLOGY, 1995, 85 (05) :579-585
[6]   MOLECULAR FINGERPRINTING OF LEGIONELLA SPECIES BY REPETITIVE ELEMENT PCR [J].
GEORGHIOU, PR ;
DOGGETT, AM ;
KIELHOFNER, MA ;
STOUT, JE ;
WATSON, DA ;
LUPSKI, JR ;
HAMILL, RJ .
JOURNAL OF CLINICAL MICROBIOLOGY, 1994, 32 (12) :2989-2994
[7]   RESTRICTION ANALYSIS OF AN AMPLIFIED POLYGALACTURONASE GENE FRAGMENT DIFFERENTIATES STRAINS OF THE PHYTOPATHOGENIC BACTERIUM PSEUDOMONAS-SOLANACEARUM [J].
GILLINGS, M ;
FAHY, P ;
DAVIES, C .
LETTERS IN APPLIED MICROBIOLOGY, 1993, 17 (01) :44-48
[8]   GENETIC DIVERSITY OF PSEUDOMONAS-SOLANACEARUM BIOVAR-2 AND BIOVAR-N2 ASSESSED USING RESTRICTION-ENDONUCLEASE ANALYSIS OF TOTAL GENOMIC DNA [J].
GILLINGS, M ;
FAHY, P .
PLANT PATHOLOGY, 1993, 42 (05) :744-753
[9]   ERIC SEQUENCES - A NOVEL FAMILY OF REPETITIVE ELEMENTS IN THE GENOMES OF ESCHERICHIA-COLI, SALMONELLA-TYPHIMURIUM AND OTHER ENTEROBACTERIA [J].
HULTON, CSJ ;
HIGGINS, CF ;
SHARP, PM .
MOLECULAR MICROBIOLOGY, 1991, 5 (04) :825-834
[10]  
Innis MA, 1990, PCR PROTOCOLS GUIDE, P282