Preliminary time-of-flight neutron diffraction study on diisopropyl fluorophosphatase (DFPase) from Loligo vulgaris

被引:22
作者
Blum, Marc-Michael
Koglin, Alexander
Rueterjans, Heinz
Schoenborn, Benno
Langan, Paul
Chen, Julian C. -H.
机构
[1] Goethe Univ Frankfurt, Inst Biophys Chem, D-60438 Frankfurt, Germany
[2] Bundeswehr Inst Pharmacol & Toxicol, D-80937 Munich, Germany
[3] Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA
[4] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM 87545 USA
[5] Univ Toledo, Dept Chem, Toledo, OH 43606 USA
来源
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS | 2007年 / 63卷
关键词
D O I
10.1107/S1744309106052924
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The enzyme diisopropyl fluorophosphatase ( DFPase) from Loligo vulgaris is capable of decontaminating a wide variety of toxic organophosphorus nerve agents. DFPase is structurally related to a number of enzymes, such as the medically important paraoxonase (PON). In order to investigate the reaction mechanism of this phosphotriesterase and to elucidate the protonation state of the active-site residues, large-sized crystals of DFPase have been prepared for neutron diffraction studies. Available H atoms have been exchanged through vapour diffusion against D2O-containing mother liquor in the capillary. A neutron data set has been collected to 2.2 angstrom resolution on a relatively small (0.43 mm(3)) crystal at the spallation source in Los Alamos. The sample size and asymmetric unit requirements for the feasibility of neutron diffraction studies are summarized.
引用
收藏
页码:42 / 45
页数:4
相关论文
共 36 条
[1]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[2]   Neutron diffraction studies of Escherichia coli dihydrofolate reductase complexed with methotrexate [J].
Bennett, Brad ;
Langan, Paul ;
Coates, Leighton ;
Mustyakimov, Marat ;
Schoenborn, Benno ;
Howell, Elizabeth E. ;
Dealwis, Chris .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (49) :18493-18498
[3]   The 15-K neutron structure of saccharide-free concanavalin A [J].
Blakeley, MP ;
Kalb, AJ ;
Helliwell, JR ;
Myles, DAA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (47) :16405-16410
[4]   Binding of a designed substrate analogue to diisopropyl fluorophosphatase:: Implications for the phosphotriesterase mechanism [J].
Blum, Marc-Michael ;
Loehr, Frank ;
Richardt, Andre ;
Rueterjans, Heinz ;
Chen, Julian C. -H. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (39) :12750-12757
[5]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[6]   A preliminary neutron diffraction study of rasburicase, a recombinant urate oxidase enzyme, complexed with 8-azaxanthin [J].
Budayova-Spano, M ;
Bonneté, F ;
Ferté, N ;
El Hajji, M ;
Meilleur, F ;
Blakeley, MP ;
Castro, B .
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2006, 62 :306-309
[7]   Crystallization and preliminary neutron analysis of the dissimilatory sulfite reductase D (DsrD) protein from the sulfate-reducing bacterium Desulfovibrio vulgaris [J].
Chatake, T ;
Mizuno, N ;
Voordouw, G ;
Higuchi, Y ;
Arai, S ;
Tanaka, I ;
Niimura, N .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2003, 59 :2306-2309
[8]  
CIPRIANI F, 1996, J NEUTRON RES, V4, P79
[9]   A neutron laue diffraction study of endothiapepsin: Implications for the aspartic proteinase mechanism [J].
Coates, L ;
Erskine, PT ;
Wood, SP ;
Myles, DAA ;
Cooper, JB .
BIOCHEMISTRY, 2001, 40 (44) :13149-13157
[10]   Improved R-factors for diffraction data analysis in macromolecular crystallography [J].
Diederichs, K ;
Karplus, PA .
NATURE STRUCTURAL BIOLOGY, 1997, 4 (04) :269-275