Shifts in growth strategies reflect tradeoffs in cellular economics

被引:456
作者
Molenaar, Douwe [1 ,3 ,4 ,5 ]
van Berlo, Rogier [2 ,3 ]
de Ridder, Dick [2 ,3 ]
Teusink, Bas [1 ,3 ,4 ,5 ]
机构
[1] Vrije Univ Amsterdam, Ctr Integrat Bioinformat IBIVU, NL-1081 HV Amsterdam, Netherlands
[2] Delft Univ Technol, Fac Elect Engn Math & Comp Sci, Informat & Commun Theory Grp, Delft, Netherlands
[3] Kluyver Ctr Genom Ind Fermentat, Delft, Netherlands
[4] Top Inst Food & Nutr, Wageningen, Netherlands
[5] Netherlands Consortium Syst Biol, Amsterdam, Netherlands
关键词
growth; metabolic efficiency; overflow metabolism; ribosome content; Warburg effect; KLEBSIELLA-AEROGENES NCTC-418; ESCHERICHIA-COLI; SACCHAROMYCES-CEREVISIAE; OVERFLOW METABOLISM; CHEMOSTAT CULTURE; EVOLUTION; YEAST; SCALE; GLYCOLYSIS; ENVIRONMENT;
D O I
10.1038/msb.2009.82
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The growth rate-dependent regulation of cell size, ribosomal content, and metabolic efficiency follows a common pattern in unicellular organisms: with increasing growth rates, cell size and ribosomal content increase and a shift to energetically inefficient metabolism takes place. The latter two phenomena are also observed in fast growing tumour cells and cell lines. These patterns suggest a fundamental principle of design. In biology such designs can often be understood as the result of the optimization of fitness. Here we show that in basic models of self-replicating systems these patterns are the consequence of maximizing the growth rate. Whereas most models of cellular growth consider a part of physiology, for instance only metabolism, the approach presented here integrates several subsystems to a complete self-replicating system. Such models can yield fundamentally different optimal strategies. In particular, it is shown how the shift in metabolic efficiency originates from a tradeoff between investments in enzyme synthesis and metabolic yields for alternative catabolic pathways. The models elucidate how the optimization of growth by natural selection shapes growth strategies. Molecular Systems Biology 5: 323; published online 3 November 2009; doi: 10.1038/msb.2009.82
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页数:10
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