Hybrid ab initio QM/MM simulation of N-methylacetamide in aqueous solution

被引:118
作者
Gao, JL [1 ]
Freindorf, M [1 ]
机构
[1] JAGIELLONIAN UNIV,DEPT THEORET CHEM,PL-30060 KRAKOW,POLAND
关键词
D O I
10.1021/jp970041q
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Combined quantum mechanical and molecular mechanical (QM/MM) simulations of N-methylacetamide in aqueous solution have been carried out to investigate the charge polarization of the solute and to explore the feasibility of hybrid QM/MM calculations using ab initio methods. In the present study, the ab initio Hartree-Fock theory along with the 3-21G basis set was used in the quantum mechanical calculations. Statistical mechanical Monte Carlo approach was then applied in molecular mechanical simulations, employing the empirical TIP3P model for water. Comparisons with results obtained from the hybrid semiempirical Austin model 1 (AM1)/TIP3P and Jorgensen's OPLS (optimized potential for liquid simulations) potential were made, and a good accord among the three methods has been obtained. The solute charge polarization was analyzed through population analyses and determination of polarization energies. We found that the polarization effects contribute 10-15% to the total solute-solvent interaction energy for N-methylacetamide in water.
引用
收藏
页码:3182 / 3188
页数:7
相关论文
共 80 条
[1]   INFRARED STUDIES OF THE LESS STABLE CIS FORM OF N-METHYLFORMAMIDE AND N-METHYLACETAMIDE IN LOW-TEMPERATURE NITROGEN MATRICES AND VIBRATIONAL ANALYSES OF THE TRANS AND CIS FORMS OF THESE MOLECULES [J].
ATAKA, S ;
TAKEUCHI, H ;
TASUMI, M .
JOURNAL OF MOLECULAR STRUCTURE, 1984, 113 (MAR) :147-160
[2]   Hybrid models for combined quantum mechanical and molecular mechanical approaches [J].
Bakowies, D ;
Thiel, W .
JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (25) :10580-10594
[3]   COOPERATIVE EFFECTS IN SIMULATED WATER [J].
BARNES, P ;
FINNEY, JL ;
NICHOLAS, JD ;
QUINN, JE .
NATURE, 1979, 282 (5738) :459-464
[4]   COMPUTER-SIMULATION AND ANALYSIS OF THE REACTION PATHWAY OF TRIOSEPHOSPHATE ISOMERASE [J].
BASH, PA ;
FIELD, MJ ;
DAVENPORT, RC ;
PETSKO, GA ;
RINGE, D ;
KARPLUS, M .
BIOCHEMISTRY, 1991, 30 (24) :5826-5832
[5]   FREE-ENERGY PERTURBATION METHOD FOR CHEMICAL-REACTIONS IN THE CONDENSED PHASE - A DYNAMICAL-APPROACH BASED ON A COMBINED QUANTUM AND MOLECULAR MECHANICS POTENTIAL [J].
BASH, PA ;
FIELD, MJ ;
KARPLUS, M .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1987, 109 (26) :8092-8094
[6]   SELF-CONSISTENT MOLECULAR-ORBITAL METHODS .21. SMALL SPLIT-VALENCE BASIS-SETS FOR 1ST-ROW ELEMENTS [J].
BINKLEY, JS ;
POPLE, JA ;
HEHRE, WJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1980, 102 (03) :939-947
[7]   HIV-1 PROTEASE CLEAVAGE MECHANISM ELUCIDATED WITH MOLECULAR-DYNAMICS SIMULATION [J].
CHATFIELD, DC ;
BROOKS, BR .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1995, 117 (20) :5561-5572
[8]   N-METHYLACETAMIDE AND ITS HYDROGEN-BONDED WATER-MOLECULES ARE VIBRATIONALLY COUPLED [J].
CHEN, XG ;
SCHWEITZERSTENNER, R ;
KRIMM, S ;
MIRKIN, NG ;
ASHER, SA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1994, 116 (24) :11141-11142
[9]   ON THE USE OF ELECTROSTATIC POTENTIAL DERIVED CHARGES IN MOLECULAR MECHANICS FORCE-FIELDS - THE RELATIVE SOLVATION FREE-ENERGY OF CIS-N-METHYL-ACETAMIDE AND TRANS-N-METHYL-ACETAMIDE [J].
CIEPLAK, P ;
KOLLMAN, P .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1991, 12 (10) :1232-1236
[10]  
DING Y, 1995, J PHYS CHEM-US, V69, P11575