Epistatic buffering of fitness loss in yeast double deletion strains

被引:94
作者
Jasnos, Lukasz [1 ]
Korona, Ryszard [1 ]
机构
[1] Jagiellonian Univ, Inst Environm Sci, PL-30387 Krakow, Poland
关键词
D O I
10.1038/ng1986
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Interactions between deleterious mutations have been insufficiently studied(1,2), despite the fact that their strength and direction are critical for understanding the evolution of genetic recombination(3,4) and the buildup of mutational load in populations(5,6). We compiled a list of 758 yeast gene deletions causing growth defects ( from the Munich Information Center for Protein Sequences database and ref. 7). Using BY4741 and BY4742 single- deletion strains, we carried out 639 random crosses and assayed growth curves of the resulting progeny. We show that the maximum growth rate averaged over strains lacking deletions and those with double deletions is higher than that of strains with single deletions, indicating a positive epistatic effect. This tendency is shared by genes belonging to a variety of functional classes. Based on our data and former theoretical work(8-10), we suggest that epistasis is likely to diminish the negative effects of mutations when the ability to produce biomass at high rates contributes significantly to fitness.
引用
收藏
页码:550 / 554
页数:5
相关论文
共 31 条
[1]   Sexual reproduction selects for robustness and negative epistasis in artificial gene networks [J].
Azevedo, RBR ;
Lohaus, R ;
Srinivasan, S ;
Dang, KK ;
Burch, CL .
NATURE, 2006, 440 (7080) :87-90
[2]  
Baganz F, 1997, YEAST, V13, P1563, DOI 10.1002/(SICI)1097-0061(199712)13:16<1563::AID-YEA240>3.0.CO
[3]  
2-6
[4]   A GENERAL-MODEL FOR THE EVOLUTION OF RECOMBINATION [J].
BARTON, NH .
GENETICAL RESEARCH, 1995, 65 (02) :123-144
[5]   Flux coupling analysis of genome-scale metabolic network reconstructions [J].
Burgard, AP ;
Nikolaev, EV ;
Schilling, CH ;
Maranas, CD .
GENOME RESEARCH, 2004, 14 (02) :301-312
[6]   MUTATION ACCUMULATION IN FINITE OUTBREEDING AND INBREEDING POPULATIONS [J].
CHARLESWORTH, D ;
MORGAN, MT ;
CHARLESWORTH, B .
GENETICS RESEARCH, 1993, 61 (01) :39-56
[7]   The variant call format and VCFtools [J].
Danecek, Petr ;
Auton, Adam ;
Abecasis, Goncalo ;
Albers, Cornelis A. ;
Banks, Eric ;
DePristo, Mark A. ;
Handsaker, Robert E. ;
Lunter, Gerton ;
Marth, Gabor T. ;
Sherry, Stephen T. ;
McVean, Gilean ;
Durbin, Richard .
BIOINFORMATICS, 2011, 27 (15) :2156-2158
[8]   The origins patterns and implications of human spontaneous mutation [J].
Crow, JF .
NATURE REVIEWS GENETICS, 2000, 1 (01) :40-47
[9]   EFFICIENCY OF TRUNCATION SELECTION [J].
CROW, JF ;
KIMURA, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1979, 76 (01) :396-399
[10]   Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network [J].
Famili, I ;
Forster, J ;
Nielson, J ;
Palsson, BO .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (23) :13134-13139