Quantum chemical studies of dioxygen activation by mononuclear non-heme iron enzymes with the 2-His-1-carboxylate facial triad

被引:86
作者
Bassan, A [1 ]
Borowski, T [1 ]
Siegbahn, PEM [1 ]
机构
[1] Stockholm Univ, Dept Phys, SE-10691 Stockholm, Sweden
关键词
D O I
10.1039/b408340g
中图分类号
O61 [无机化学];
学科分类号
070301 ; 081704 ;
摘要
Density functional theory with the B3LYP hybrid functional has been used to study the mechanisms for dioxygen activation by four families of mononuclear non-heme iron enzymes: alpha-ketoacid-dependent dioxygenases, tetrahydrobiopterin-dependent hydroxylases, extradiol dioxygenases, and Rieske dioxygenases. These enzymes have a common active site with a ferrous ion coordinated to two histidines and one carboxylate group (aspartate or glutamate). In contrast to the heme case, this type of weak field environment always leads to a high-spin ground state. With the exception of the Rieske dioxygenases, which have an electron source outside the active site, the dioxygen activation process passes through the formation of a bridging-peroxide species, which then undergoes O-O bond cleavage finally leading to the four electron reduction of O-2. In the case of tetrahydrobiopterin- and alpha-ketoacid-dependent enzymes, the O-O heterolysis yields a high-valent iron-oxo species, which is capable of performing a two-electron oxidation chemistry on various organic substrates. For the other two families of enzymes (extradiol dioxygenases and Rieske dioxygenases) the substrate oxidation and the O-O bond cleavage are found to be coupled. In the extradiol dioxygenases the product of the O-O bond cleavage is a ferric iron with an oxy-substrate with a mixture of radical and anionic character, which is essential for the selectivity of the catechol cleavage.
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页码:3153 / 3162
页数:10
相关论文
共 88 条
  • [1] Human and bacterial oxidative demethylases repair alkylation damage in both RNA and DNA
    Aas, PA
    Otterlei, M
    Falnes, PO
    Vågbo, CB
    Skorpen, F
    Akbari, M
    Sundheim, O
    Bjorås, M
    Slupphaug, G
    Seeberg, E
    Krokan, HE
    [J]. NATURE, 2003, 421 (6925) : 859 - 863
  • [2] 2.0 Å resolution crystal structures of the ternary complexes of human phenylalanine hydroxylase catalytic domain with tetrahydrobiopterin and 3-(2-thienyl)-L-alanine or L-norleucine:: Substrate specificity and molecular motions related to substrate binding
    Andersen, OA
    Stokka, AJ
    Flatmark, T
    Hough, E
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2003, 333 (04) : 747 - 757
  • [3] Crystal structure of the ternary complex of the catalytic domain of human phenylalanine hydroxylase with tetrahydrobiopterin and 3-(2-thienyl)-L-alanine, and its implications for the mechanism of catalysis and substrate activation
    Andersen, OA
    Flatmark, T
    Hough, E
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2002, 320 (05) : 1095 - 1108
  • [4] ARCIERO DM, 1986, J BIOL CHEM, V261, P2170
  • [5] Mechanism of aromatic hydroxylation by an activated feIV=O core in tetrahydrobiopterin-dependent hydroxylases
    Bassan, A
    Blomberg, MRA
    Siegbahn, PEM
    [J]. CHEMISTRY-A EUROPEAN JOURNAL, 2003, 9 (17) : 4055 - 4067
  • [6] Oxygen activation by Rieske non-heme iron oxygenases, a theoretical insight
    Bassan, A
    Blomberg, MRA
    Borowski, T
    Siegbahn, PEM
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2004, 108 (34) : 13031 - 13041
  • [7] A theoretical study of the cis-dihydroxylation mechanism in naphthalene 1,2-dioxygenase
    Bassan, A
    Blomberg, MRA
    Siegbahn, PEM
    [J]. JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2004, 9 (04): : 439 - 452
  • [8] Mechanism of dioxygen cleavage in tetrahydrobiopterin-dependent amino acid hydroxylases
    Bassan, A
    Blomberg, MRA
    Siegbahn, PEM
    [J]. CHEMISTRY-A EUROPEAN JOURNAL, 2003, 9 (01) : 106 - 115
  • [9] A density functional study of O-O bond cleavage for a biomimetic non-heme iron complex demonstrating an FeV-intermediate
    Bassan, A
    Blomberg, MRA
    Siegbahn, PEM
    Que, L
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (37) : 11056 - 11063
  • [10] BASSAN A, 2004, THESIS STOCKHOLM U S