On the structure of genealogical trees in the presence of selection

被引:4
作者
Campos, PRA [1 ]
Sonoda, MT [1 ]
Fontanari, JF [1 ]
机构
[1] Univ Sao Paulo, Inst Fis Sao Carlos, BR-13560970 Sao Carlos, SP, Brazil
基金
巴西圣保罗研究基金会;
关键词
genealogical tree; coalescent; infinite-sites model;
D O I
10.1016/S0378-4371(00)00122-9
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
We investigate through numerical simulations the effect of selection on two summary statistics for nucleotide variation in a sample of two genes from a population of N asexually reproducing haploid individuals. One is the mean time since two individuals had their most recent common ancestor (<(T)over bar(s)>), and the other is the mean number of nucleotide differences between two genes in the sample (<(d)over bar(s)>). In the case of diminishing epistasis, in which the deleterious effect of a new mutation is attenuated, we find that the scale of <(d)over bar(s)> with the population size depends on the mutation rate, leading then to the onset of a sharp threshold phenomenon as N becomes large. (C) 2000 Elsevier Science B.V. All rights reserved.
引用
收藏
页码:11 / 16
页数:6
相关论文
共 10 条
[1]   The variant call format and VCFtools [J].
Danecek, Petr ;
Auton, Adam ;
Abecasis, Goncalo ;
Albers, Cornelis A. ;
Banks, Eric ;
DePristo, Mark A. ;
Handsaker, Robert E. ;
Lunter, Gerton ;
Marth, Gabor T. ;
Sherry, Stephen T. ;
McVean, Gilean ;
Durbin, Richard .
BIOINFORMATICS, 2011, 27 (15) :2156-2158
[2]   EVOLUTION IN A FLAT FITNESS LANDSCAPE [J].
DERRIDA, B ;
PELITI, L .
BULLETIN OF MATHEMATICAL BIOLOGY, 1991, 53 (03) :355-382
[3]   Coalescing into the 21st century: An overview and prospects of coalescent theory [J].
Fu, YX ;
Li, WH .
THEORETICAL POPULATION BIOLOGY, 1999, 56 (01) :1-10
[4]  
HIGGS PG, 1995, J MATH BIOL, V33, P677, DOI 10.1007/BF00184644
[5]  
HUDSON RR, 1991, OXF SURV EVOL BIOL, V7, P1
[6]  
KAPLAN NL, 1988, GENETICS, V120, P819
[7]  
KIMURA M, 1971, Theoretical Population Biology, V2, P174
[8]  
Kingman J.F., 1982, J. Appl. Probab., P27, DOI DOI 10.2307/3213548
[9]   Ancestral processes with selection [J].
Krone, SM ;
Neuhauser, C .
THEORETICAL POPULATION BIOLOGY, 1997, 51 (03) :210-237
[10]   NUMBER OF SEGREGATING SITES IN GENETIC MODELS WITHOUT RECOMBINATION [J].
WATTERSON, GA .
THEORETICAL POPULATION BIOLOGY, 1975, 7 (02) :256-276