A unifying view of 21st century systems biology

被引:76
作者
Vidal, Marc [1 ,2 ,3 ]
机构
[1] Harvard Univ, Sch Med, CCSB, Boston, MA 02115 USA
[2] Harvard Univ, Sch Med, Dept Canc Biol, Dana Farber Canc Inst, Boston, MA 02115 USA
[3] Harvard Univ, Sch Med, Dept Genet, Boston, MA 02115 USA
基金
美国国家科学基金会;
关键词
Systems biology; Network biology; Interactome network; GENETIC-CONTROL; ESCHERICHIA-COLI; BIOSYNTHESIS; INTERACTOME; ROBUSTNESS; NETWORK; GROWTH; SWITCH;
D O I
10.1016/j.febslet.2009.11.024
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The idea that multi-scale dynamic complex systems formed by interacting macromolecules and metabolites, cells, organs and organisms underlie some of the most fundamental aspects of life was proposed by a few visionaries half a century ago. We are witnessing a powerful resurgence of this idea made possible by the availability of nearly complete genome sequences, ever improving gene annotations and interactome network maps, the development of sophisticated informatic and imaging tools, and importantly, the use of engineering and physics concepts such as control and graph theory. Alongside four other fundamental "great ideas" as suggested by Sir Paul Nurse, namely, the gene, the cell, the role of chemistry in biological processes, and evolution by natural selection, systems-level understanding of "What is Life" may materialize as one of the major ideas of biology. (c) 2009 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.
引用
收藏
页码:3891 / 3894
页数:4
相关论文
共 37 条
[1]   Internet -: Diameter of the World-Wide Web [J].
Albert, R ;
Jeong, H ;
Barabási, AL .
NATURE, 1999, 401 (6749) :130-131
[2]   Error and attack tolerance of complex networks [J].
Albert, R ;
Jeong, H ;
Barabási, AL .
NATURE, 2000, 406 (6794) :378-382
[3]   Robustness in bacterial chemotaxis [J].
Alon, U ;
Surette, MG ;
Barkai, N ;
Leibler, S .
NATURE, 1999, 397 (6715) :168-171
[4]   Emergence of scaling in random networks [J].
Barabási, AL ;
Albert, R .
SCIENCE, 1999, 286 (5439) :509-512
[5]   Robustness in simple biochemical networks [J].
Barkai, N ;
Leibler, S .
NATURE, 1997, 387 (6636) :913-917
[6]   Genetic control of biochemical reactions in neurospora [J].
Beadle, GW ;
Tatum, EL .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1941, 27 :499-506
[7]   Engineering stability in gene networks by autoregulation [J].
Becskei, A ;
Serrano, L .
NATURE, 2000, 405 (6786) :590-593
[8]   Kinetic analysis of a molecular model of the budding yeast cell cycle [J].
Chen, KC ;
Csikasz-Nagy, A ;
Gyorffy, B ;
Val, J ;
Novak, B ;
Tyson, JJ .
MOLECULAR BIOLOGY OF THE CELL, 2000, 11 (01) :369-391
[9]  
Delbruck M., 1949, Unites biologiques douees de continuite genetique Colloques Internationaux du Centre National de la Recherche Scientifique: CNRS, P33
[10]   In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data [J].
Edwards, JS ;
Ibarra, RU ;
Palsson, BO .
NATURE BIOTECHNOLOGY, 2001, 19 (02) :125-130