XAS spectroscopy reveals X-ray-induced photoreduction of free and protein-bound B12 cofactors

被引:52
作者
Champloy, F [1 ]
Gruber, K [1 ]
Jogl, G [1 ]
Kratky, C [1 ]
机构
[1] Karl Franzens Univ Graz, Inst Chem, A-8010 Graz, Austria
关键词
B-12; X-ray absorption spectroscopy; XANES; glutamate mutase; cobalamin; enzyme mechanisms;
D O I
10.1107/S0909049500006336
中图分类号
TH7 [仪器、仪表];
学科分类号
0804 ; 080401 ; 081102 ;
摘要
Crystal structures of several proteins with a B-12 cofactor show abnormally long axial bonds between the cofactor's Co atom and its 'lower' ligand, which is typically a protein-derived imidazole from a histidine residue. X-ray absorption spectroscopy (XAS) experiments were carried out with the following cofactor derivatives to examine the question of whether the bond elongation might be due to an X-ray-induced reduction of the cofactor's cobalt centre: aquocobalamin, cyanocobalamin, methylcobalamin, 5'-desoxyadenosylcobalamin and cob(II)alamin. Each cofactor was investigated at 100 K in a water/glycerol or water/trehalose glass, both as unbound free species and bound to the protein components of the enzyme glutamate mutase. XAS data were collected for each sample around the cobalt absorption edge before and after exhaustive (10 min) irradiation with X-rays of energy 7.76 keV. While XAS spectra for cob(II)alamin, methylcobalamin and 5'-desoxyadenosylcobalamin were the same (within experimental error) before and after irradiation, both in the free and protein-bound state, the spectra of samples with aquocobalamin and cyanocobalamin changed substantially upon irradiation. The spectra of the irradiated samples resembled each other and were similar - but not identical - to the spectrum of the reduced cob(II)alamin. The implications of these observations for the interpretation of the 'long' axial Co-N bonds observed crystallographically in B-12 proteins are discussed.
引用
收藏
页码:267 / 273
页数:7
相关论文
共 32 条
  • [1] SYSTEMATIC ANALYSIS OF STRUCTURAL DATA AS A RESEARCH TECHNIQUE IN ORGANIC-CHEMISTRY
    ALLEN, FH
    KENNARD, O
    TAYLOR, R
    [J]. ACCOUNTS OF CHEMICAL RESEARCH, 1983, 16 (05) : 146 - 153
  • [2] CAMBRIDGE CRYSTALLOGRAPHIC DATA CENTER - COMPUTER-BASED SEARCH, RETRIEVAL, ANALYSIS AND DISPLAY OF INFORMATION
    ALLEN, FH
    BELLARD, S
    BRICE, MD
    CARTWRIGHT, BA
    DOUBLEDAY, A
    HIGGS, H
    HUMMELINK, T
    HUMMELINKPETERS, BG
    KENNARD, O
    MOTHERWELL, WDS
    RODGERS, JR
    WATSON, DG
    [J]. ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1979, 35 (OCT): : 2331 - 2339
  • [3] Banerjee R, 1999, CHEM BIOCH B12
  • [4] BARKER HA, 1964, J BIOL CHEM, V239, P3260
  • [5] Identification of the 4-glutamyl radical as an intermediate in the carbon skeleton rearrangement catalyzed by coenzyme B12-dependent glutamate mutase from Clostridium cochlearium
    Bothe, H
    Darley, DJ
    Albracht, SPJ
    Gerfen, GJ
    Golding, BT
    Buckel, W
    [J]. BIOCHEMISTRY, 1998, 37 (12) : 4105 - 4113
  • [6] PORPHYRIN SPONGES - CONSERVATION OF HOST STRUCTURE IN OVER 200 PORPHYRIN-BASED LATTICE CLATHRATES
    BYRN, MP
    CURTIS, CJ
    HSIOU, Y
    KHAN, SI
    SAWIN, PA
    TENDICK, SK
    TERZIS, A
    STROUSE, CE
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1993, 115 (21) : 9480 - 9497
  • [7] EXAFS data indicate a "normal" axial cobalt-nitrogen bond of the organo-B12 cofactor in the two coenzyme B12-dependent enzymes glutamate mutase and 2-methyleneglutarate mutase
    Champloy, F
    Jogl, G
    Reitzer, R
    Buckel, W
    Bothe, H
    Beatrix, B
    Broeker, G
    Michalowicz, A
    Meyer-Klaucke, W
    Kratky, C
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (50) : 11780 - 11789
  • [8] Chance M. R., 1999, Chemistry and biochemistry of B12., P43
  • [9] ELECTRON-PARAMAGNETIC-RESONANCE STUDY OF THE MIXED-VALENT DIIRON CENTER IN ESCHERICHIA-COLI RIBONUCLEOTIDE REDUCTASE PRODUCED BY REDUCTION OF RADICAL-FREE PROTEIN-R2 AT 77-K
    DAVYDOV, R
    KUPRIN, S
    GRASLUND, A
    EHRENBERG, A
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1994, 116 (24) : 11120 - 11128
  • [10] HOW A PROTEIN BINDS B-12 - A 3.0-ANGSTROM X-RAY STRUCTURE OF B-12-BINDING DOMAINS OF METHIONINE SYNTHASE
    DRENNAN, CL
    HUANG, S
    DRUMMOND, JT
    MATTHEWS, RG
    LUDWIG, ML
    [J]. SCIENCE, 1994, 266 (5191) : 1669 - 1674