From genome to proteome: Protein map of Haemophilus influenzae

被引:42
作者
Langen, H [1 ]
Gray, C [1 ]
Roder, D [1 ]
Juranville, JF [1 ]
Takacs, B [1 ]
Fountoulakis, M [1 ]
机构
[1] F HOFFMANN LA ROCHE & CO LTD, PHARMACEUT RES, INFECT DIS, CH-4070 BASEL, SWITZERLAND
关键词
amino acid analysis; mass spectrometry; protein identification; two-dimensional polyacrylamide gel electrophoresis;
D O I
10.1002/elps.1150180727
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
High-resolution two-dimensional (2-D) polyacrylamide gel electrophoresis allows the separation of complex biological mixtures (i.e., several hundred proteins from a bacterial cell lysate) in a single experiment. In this report proteins from Haemophilus influenzae were separated by 2-D gels and analyzed by peptide mass fingerprinting and/or amino acid analysis. By comparing the peptide mass profiles and the amino acid composition with the Haemophilus influenzae database, 119 protein spats were identified. The combination of amino acid analysis and peptide mass fingerprinting is a powerful tool for a rapid and economical identification of a large number of proteins resolved by 2-D gels. Studies on gene regulation and changes of protein expression upon drug treatment require quick and serial analysis techniques to efficiently identify potential new drug targets.
引用
收藏
页码:1184 / 1192
页数:9
相关论文
共 27 条
[1]   Twenty years of two-dimensional electrophoresis: Past, present and future [J].
Anderson, NG ;
Anderson, NL .
ELECTROPHORESIS, 1996, 17 (03) :443-453
[2]   RAPID, SENSITIVE ANALYSIS OF PROTEIN MIXTURES BY MASS-SPECTROMETRY [J].
BEAVIS, RC ;
CHAIT, BT .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1990, 87 (17) :6873-6877
[3]  
Bergey D.H., 1984, Bergey's manual of systematic bacteriology
[4]   MICROPREPARATIVE 2-DIMENSIONAL ELECTROPHORESIS ALLOWING THE SEPARATION OF SAMPLES CONTAINING MILLIGRAM AMOUNTS OF PROTEINS [J].
BJELLQVIST, B ;
SANCHEZ, JC ;
PASQUALI, C ;
RAVIER, F ;
PAQUET, N ;
FRUTIGER, S ;
HUGHES, GJ ;
HOCHSTRASSER, D .
ELECTROPHORESIS, 1993, 14 (12) :1375-1378
[5]   CHARACTERIZATION OF HAEMOPHILUS-INFLUENZAE PROTEINS BY 2-DIMENSIONAL GEL-ELECTROPHORESIS [J].
CASH, P ;
ARGO, E ;
BRUCE, KD .
ELECTROPHORESIS, 1995, 16 (01) :135-148
[6]   THE HUMAN KERATINOCYTE 2-DIMENSIONAL PROTEIN DATABASE (UPDATE-1994) - TOWARDS AN INTEGRATED APPROACH TO THE STUDY OF CELL-PROLIFERATION, DIFFERENTIATION AND SKIN-DISEASES [J].
CELIS, JE ;
RASMUSSEN, HH ;
OLSEN, E ;
MADSEN, P ;
LEFFERS, H ;
HONORE, B ;
DEJGAARD, K ;
GROMOV, P ;
VORUM, H ;
VASSILEV, A ;
BASKIN, Y ;
LIU, XD ;
CELIS, A ;
BASSE, B ;
LAURIDSEN, JB ;
RATZ, GP ;
ANDERSEN, AH ;
WALBUM, E ;
KJAERGAARD, I ;
ANDERSEN, I ;
PUYPE, M ;
VANDAMME, J ;
VANDEKERCKHOVE, J .
ELECTROPHORESIS, 1994, 15 (11) :1349-1458
[7]   THE HUMAN MYOCARDIAL 2-DIMENSIONAL GEL PROTEIN DATABASE - UPDATE-1994 [J].
CORBETT, JM ;
WHEELER, CH ;
BAKER, CS ;
YACOUB, MH ;
DUNN, MJ .
ELECTROPHORESIS, 1994, 15 (11) :1459-1465
[8]   CROSS-SPECIES IDENTIFICATION OF PROTEINS SEPARATED BY 2-DIMENSIONAL GEL-ELECTROPHORESIS USING MATRIX-ASSISTED LASER-DESORPTION IONIZATION TIME-OF-FLIGHT MASS-SPECTROMETRY AND AMINO-ACID-COMPOSITION [J].
CORDWELL, SJ ;
WILKINS, MR ;
CERPAPOLJAK, A ;
GOOLEY, AA ;
DUNCAN, M ;
WILLIAMS, KL ;
HUMPHERYSMITH, I .
ELECTROPHORESIS, 1995, 16 (03) :438-443
[9]  
COTTRELL JS, 1994, PEPTIDE RES, V7, P115
[10]   WHOLE-GENOME RANDOM SEQUENCING AND ASSEMBLY OF HAEMOPHILUS-INFLUENZAE RD [J].
FLEISCHMANN, RD ;
ADAMS, MD ;
WHITE, O ;
CLAYTON, RA ;
KIRKNESS, EF ;
KERLAVAGE, AR ;
BULT, CJ ;
TOMB, JF ;
DOUGHERTY, BA ;
MERRICK, JM ;
MCKENNEY, K ;
SUTTON, G ;
FITZHUGH, W ;
FIELDS, C ;
GOCAYNE, JD ;
SCOTT, J ;
SHIRLEY, R ;
LIU, LI ;
GLODEK, A ;
KELLEY, JM ;
WEIDMAN, JF ;
PHILLIPS, CA ;
SPRIGGS, T ;
HEDBLOM, E ;
COTTON, MD ;
UTTERBACK, TR ;
HANNA, MC ;
NGUYEN, DT ;
SAUDEK, DM ;
BRANDON, RC ;
FINE, LD ;
FRITCHMAN, JL ;
FUHRMANN, JL ;
GEOGHAGEN, NSM ;
GNEHM, CL ;
MCDONALD, LA ;
SMALL, KV ;
FRASER, CM ;
SMITH, HO ;
VENTER, JC .
SCIENCE, 1995, 269 (5223) :496-512