Pyrosequencing for microbial typing

被引:65
作者
Ronaghi, M
Elahi, E
机构
[1] Stanford Univ, Stanford Genome Technol Ctr, Palo Alto, CA 94304 USA
[2] Univ Tehran, Fac Sci, Tehran, Iran
来源
JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES | 2002年 / 782卷 / 1-2期
关键词
reviews; pyrosequencing; genotyping; multiplexing;
D O I
10.1016/S1570-0232(02)00693-1
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Pyrosequencing is a real-time DNA sequencing technique generating short reads rapidly and inexpensively. This technology has the potential advantage of accuracy, ease-of-use, high flexibility and is now emerging as a popular platform for microbial typing. Here, we review the methodology and the use of this technique for viral typing, bacteria] typing, and fungal typing. In addition, we describe how to use multiplexing for accurate and rapid typing. (C) 2002 Elsevier Science B.V. All rights reserved.
引用
收藏
页码:67 / 72
页数:6
相关论文
共 24 条
[2]   Methods for the differentiation of microorganisms [J].
Busch, U ;
Nitschko, H .
JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES, 1999, 722 (1-2) :263-278
[3]  
ELAHI E, 2002, UNPUB
[4]   Pyrosequencing™:: An accurate detection platform for single nucleotide polymorphisms [J].
Fakhrai-Rad, H ;
Pourmand, N ;
Ronaghi, M .
HUMAN MUTATION, 2002, 19 (05) :479-485
[5]   GENE TYPING OF CHLAMYDIA TRACHOMATIS BY POLYMERASE CHAIN-REACTION AND RESTRICTION ENDONUCLEASE DIGESTION [J].
GAYDOS, CA ;
BOBO, L ;
WELSH, L ;
HOOK, EW ;
VISCIDI, R ;
QUINN, TC .
SEXUALLY TRANSMITTED DISEASES, 1992, 19 (06) :303-308
[6]   Long-read pyrosequencing using pure 2′-deoxyadenosine-5′-O′-(1-thiotriphosphate) Sp-isomer [J].
Gharizadeh, B ;
Nordström, T ;
Ahmadian, A ;
Ronaghi, M ;
Nyrén, P .
ANALYTICAL BIOCHEMISTRY, 2002, 301 (01) :82-90
[7]   Typing of human papillomavirus by pyrosequencing [J].
Gharizadeh, B ;
Kalantari, M ;
Garcia, CA ;
Johansson, B ;
Nyrén, P .
LABORATORY INVESTIGATION, 2001, 81 (05) :673-679
[8]  
GHARIZADEH B, 2002, UNPUB MYCOLOGIA
[9]  
MAYER L W, 1988, Clinical Microbiology Reviews, V1, P228
[10]   ANALYSIS OF RESTRICTION FRAGMENTS OF T7 DNA AND DETERMINATION OF MOLECULAR-WEIGHTS BY ELECTROPHORESIS IN NEUTRAL AND ALKALINE GELS [J].
MCDONELL, MW ;
SIMON, MN ;
STUDIER, FW .
JOURNAL OF MOLECULAR BIOLOGY, 1977, 110 (01) :119-146