Applications of single-wavelength anomalous dispersion at high and atomic resolution

被引:66
作者
Brodersen, DE
de la Fortelle, E
Vonrhein, C
Bricogne, G
Nyborg, J
Kjeldgaard, M
机构
[1] Aarhus Univ, IMSB, DK-8000 Aarhus C, Denmark
[2] MRC, Mol Biol Lab, Cambridge CB2 2QH, England
[3] LURE, F-91405 Orsay, France
来源
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 2000年 / 56卷
关键词
D O I
10.1107/S0907444900000834
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Two examples of the application of single-wavelength anomalous dispersion (SAD) in macromolecular structure determination are described, both using the statistical phasing program SHARP. For the holmium-substituted calcium-binding protein psoriasin (22.7 kDa), a set of accurate phases has been obtained to a resolution of 1.05 Angstrom without recourse to an atomic model of the molecule. The accuracy of the phases resulted in an electron-density map of a quality comparable to sigma(A)-weighted 2mF(o) - DFc maps derived from the final model refined with SHELX97. Comparison of the refined and SAD electron-density maps showed significant discrepancies resulting from the iterative refinement in reciprocal space. Additionally, it is shown that the structure of psoriasin can be determined from native data extending to 2.0 Angstrom alone by exploiting the minute anomalous signal from a bound zinc ion.
引用
收藏
页码:431 / 441
页数:11
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  • [1] Methods used in the structure determination of bovine mitochondrial F-1 ATPase
    Abrahams, JP
    Leslie, AGW
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1996, 52 : 30 - 42
  • [2] THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY
    BAILEY, S
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 : 760 - 763
  • [3] STRUCTURE OF OPTICALLY ACTIVE COMPOUNDS IN THE SOLID STATE
    BIJVOET, JM
    [J]. NATURE, 1954, 173 (4411) : 888 - 891
  • [4] X-RAY CRYSTALLOGRAPHY SHOWS THAT TRANSLATIONAL INITIATION-FACTOR IF3 CONSISTS OF 2 COMPACT ALPHA/BETA DOMAINS LINKED BY AN ALPHA-HELIX
    BIOU, V
    SHU, F
    RAMAKRISHNAN, V
    [J]. EMBO JOURNAL, 1995, 14 (16) : 4056 - 4064
  • [5] DIRECT PHASE DETERMINATION BY ENTROPY MAXIMIZATION AND LIKELIHOOD RANKING - STATUS-REPORT AND PERSPECTIVES
    BRICOGNE, G
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 1993, 49 : 37 - 60
  • [6] Bricogne G, 1997, METHOD ENZYMOL, V277, P14, DOI 10.1016/S0076-6879(97)77004-6
  • [7] Bricogne G., 1996, P CCP4 STUD WEEK MAC, P85
  • [8] Zinc-binding site of an S100 protein revealed.: Two crystal structures of Ca2+-bound human psoriasin (S100A7) in the Zn2+-loaded and Zn2+-free states
    Brodersen, DE
    Nyborg, J
    Kjeldgaard, M
    [J]. BIOCHEMISTRY, 1999, 38 (06) : 1695 - 1704
  • [9] EF-hands at atomic resolution: the structure of human psoriasin (S100A7) solved by MAD phasing
    Brodersen, DE
    Etzerodt, M
    Madsen, P
    Celis, JE
    Thogersen, HC
    Nyborg, J
    Kjeldgaard, M
    [J]. STRUCTURE, 1998, 6 (04) : 477 - 489
  • [10] CRYSTALLOGRAPHIC R-FACTOR REFINEMENT BY MOLECULAR-DYNAMICS
    BRUNGER, AT
    KURIYAN, J
    KARPLUS, M
    [J]. SCIENCE, 1987, 235 (4787) : 458 - 460