Correlations between genomic GC levels and optimal growth temperatures in prokaryotes

被引:97
作者
Musto, H
Naya, H
Zavala, A
Romero, H
Alvarez-Valín, F
Bernardi, G [1 ]
机构
[1] Staz Zool Anton Dohrn, Lab Evoluz Mol, I-80121 Naples, Italy
[2] Fac Ciencias, Lab Org & Evoluc Genoma, Montevideo, Uruguay
[3] Fac Ciencias, Secc Biomatemat, Montevideo, Uruguay
[4] Fac Med, Escuela Univ Tecnol Med, Montevideo, Uruguay
关键词
genome evolution; isochores; DNA thermodynamic stability;
D O I
10.1016/j.febslet.2004.07.056
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In prokaryotes, GC levels range from 25% to 75%, and T-opt from approximate to 0degreesC to < 100degreesC. When all species are considered together, no correlation is found between the two variables. Correlations are found, however, when Families of prokaryotes are analysed. Indeed, when Families comprising at least 10 species were studied (a set of 20 Families), positive correlations are found for 15 of them. Furthermore, a comparative analysis by independent contrasts made within the Families in order to control for phylogenetic non-independence showed qualitatively equivalent results. We conclude that Topt is one of the factors that influences genomic GC in prokaryotes. (C) 2004 Published by Elsevier B.V. on behalf of the Federation of European Biochemical Societies.
引用
收藏
页码:73 / 77
页数:5
相关论文
共 31 条
[1]   Synonymous and nonsynonymous substitutions in genes from Gramineae:: Intragenic correlations [J].
Alvarez-Valin, F ;
Jabbari, K ;
Carels, N ;
Bernardi, G .
JOURNAL OF MOLECULAR EVOLUTION, 1999, 49 (03) :330-342
[2]  
[Anonymous], AUTHOR
[3]   CORRELATION BETWEEN THE COMPOSITIONS OF DEOXYRIBONUCLEIC AND RIBONUCLEIC ACIDS [J].
BELOZERSKY, AN ;
SPIRIN, AS .
NATURE, 1958, 182 (4628) :111-112
[4]   COMPOSITIONAL CONSTRAINTS AND GENOME EVOLUTION [J].
BERNARDI, G ;
BERNARDI, G .
JOURNAL OF MOLECULAR EVOLUTION, 1986, 24 (1-2) :1-11
[5]  
BERNARDI G, 1993, MOL BIOL EVOL, V10, P186
[6]  
Bernardi G., 2004, STRUCTURAL EVOLUTION
[7]   Weighted neighbor joining: A likelihood-based approach to distance-based phylogeny reconstruction [J].
Bruno, WJ ;
Socci, ND ;
Halpern, AL .
MOLECULAR BIOLOGY AND EVOLUTION, 2000, 17 (01) :189-197
[8]   The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy [J].
Cole, JR ;
Chai, B ;
Marsh, TL ;
Farris, RJ ;
Wang, Q ;
Kulam, SA ;
Chandra, S ;
McGarrell, DM ;
Schmidt, TM ;
Garrity, GM ;
Tiedje, JM .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :442-443
[9]   ALTERED BASE RATIOS IN DNA OF AN ESCHERICHIA COLI MUTATOR STRAIN [J].
COX, EC ;
YANOFSKY, C .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1967, 58 (05) :1895-&
[10]   DNA CYTOSINE METHYLATION AND HEAT-INDUCED DEAMINATION [J].
EHRLICH, M ;
NORRIS, KF ;
WANG, RYH ;
KUO, KC ;
GEHRKE, CW .
BIOSCIENCE REPORTS, 1986, 6 (04) :387-393