Role of protein frame and solvent for the redox properties of azurin from Pseudomonas aeruginosa

被引:134
作者
Cascella, Michele
Magistrato, Alessandra
Tavernelli, Ivano
Carloni, Paolo
Rothlisberger, Ursula [1 ]
机构
[1] Ecole Polytech Fed Lausanne, Lab Computat Chem & Biochem, CH-1015 Lausanne, Switzerland
[2] CNR, Natl Inst Phys Matter, Democritos Natl Simulat Ctr, I-34014 Trieste, Italy
[3] Scuola Int Super Studi Avanzati, I-34014 Trieste, Italy
关键词
density functional theory; electron transfer; molecular dynamics; reorganization energy;
D O I
10.1073/pnas.0607890103
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We have coupled hybrid quantum mechanics (density functional theory; Car-Parrinello)/molecular mechanics molecular dynamics simulations to a grand-canonical scheme, to calculate the in situ redox potential of the Cu2+ + e(-) -> Cu+ half reaction in azurin from Pseudomonas aeruginosa. An accurate description at atomistic level of the environment surrounding the metal-binding site and finite-temperature fluctuations of the protein structure are both essential for a correct quantitative description of the electronic properties of this system. We report a redox potential shift with respect to copper in water of 0.2 eV (experimental 0.16 eV) and a reorganization free energy lambda = 0.76 eV (experimental 0.6-0.8 eV). The electrostatic field of the protein plays a crucial role in fine tuning the redox potential and determining the structure of the solvent. The inner-sphere contribution to the reorganization energy is negligible. The overall small value is mainly due to solvent rearrangement at the protein surface.
引用
收藏
页码:19641 / 19646
页数:6
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