SOAS: A free program to analyze electrochemical data and other one-dimensional signals

被引：96

作者：

Fourmond, Vincent ^{[1
,2
,3
]}

Hoke, Kevin ^{[4
]}

Heering, Hendrik A. ^{[5
]}

Baffert, Carole ^{[1
,2
,3
]}

Leroux, Fanny ^{[1
,2
,3
]}

Bertrand, Patrick ^{[1
,2
,3
]}

Leger, Christophe ^{[1
,2
,3
]}

机构：

[1] CNRS, Unite Bioenerget & Ingn Prot, UPR 9036, F-13402 Marseille 20, France

[2] Univ Aix Marseille 3, F-13333 Marseille 3, France

[3] CNRS, Marseille, France

[4] Berry Coll, Dept Chem, Mt Berry, GA 30149 USA

[5] Leiden Univ, Leiden Inst Chem, NL-2333 CC Leiden, Netherlands

来源：

BIOELECTROCHEMISTRY | 2009年 / 76卷 / 1-2期

关键词：

Open source software; Electron transfer; Protein film voltammetry; Data analysis; PROBLEM-SOLVING ENVIRONMENT; ENZYME ELECTROKINETICS;

D O I：

10.1016/j.bioelechem.2009.02.010

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

This paper describes an open source program called SOAS, which we developed with the aim of analysing one-dimensional signals. It offers a large set of commands for handling voltammetric and chronoamperometric data. including smoothing signals, differentiation, subtracting baselines, fitting current responses. measuring limiting currents, and searching for peak positions. Although emphasis is on the analysis of electrochemical signals, particularly protein film voltammetry data, SOAS may also prove useful for processing spectra. This free program is available by download from the Internet, and can be installed on computers running any flavor of Unix or Linux, most easily on MacOS X. (C) 2009 Elsevier B.V. All rights reserved.

引用

页码：141 / 147

页数：7

共 18 条

[1] A needle in a haystack:: The active site of the membrane-bound complex cytochrome c nitrite reductase [J].

Almeida, M. Gabriela ;

Silveira, Celia M. ;

Guigliarelli, Bruno ;

Bertrand, Patrick ;

Moura, Jose J. G. ;

Moura, Isabel ;

Leger, Christophe .

FEBS LETTERS, 2007, 581 (02) :284-288

[2] Redox enzymes immobilized on electrodes with solution cosubstrates. General procedure for simulation of time-resolved catalytic responses [J].

Andrieux, Claude P. ;

Limoges, Benoit ;

Marchal, Damien ;

Saveant, Jean-Michel .

ANALYTICAL CHEMISTRY, 2006, 78 (09) :3138-3143

[3] ELSIM - Problem-solving environment for electrochemical kinetic simulations. Version 3.0 solution of governing equations associated with interfacial species, independent of spatial coordinates or in one-dimensional space geometry [J].

Bieniasz, LK .

COMPUTERS & CHEMISTRY, 1997, 21 (01) :1-12

[4] ODRPACK - SOFTWARE FOR WEIGHTED ORTHOGONAL DISTANCE REGRESSION [J].

BOGGS, PT ;

DONALDSON, JR ;

BYRD, RH ;

SCHNABEL, RB .

ACM TRANSACTIONS ON MATHEMATICAL SOFTWARE, 1989, 15 (04) :348-364

[5]

Britz D., 2005, Digital simulation in electrochemistry, V3rd

[6] Direct electrochemical characterization of archaeal thioredoxins [J].

Chobot, Sarah E. ;

Hernandez, Hector H. ;

Drennan, Catherine L. ;

Elliott, Sean J. .

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2007, 46 (22) :4145-4147

[7] Correcting for Electrocatalyst Desorption and Inactivation in Chronoamperometry Experiments [J].

Fourmond, Vincent ;

Lautier, Thomas ;

Baffert, Carole ;

Leroux, Fanny ;

Liebgott, Pierre-Pol ;

Dementin, Sebastien ;

Rousset, Marc ;

Arnoux, Pascal ;

Pignol, David ;

Meynial-Salles, Isabelle ;

Soucaille, Phillippe ;

Bertrand, Patrick ;

Leger, Christophe .

ANALYTICAL CHEMISTRY, 2009, 81 (08) :2962-2968

[8]

Gosser D.K., 1993, Cyclic voltammetry: simulation and analysis of reaction mechanisms

[9] Enzyme electrokinetics:: Electrochemical studies of the anaerobic interconversions between active and inactive states of Allochromatium vinosum [NiFe]-hydrogenase [J].

Jones, AK ;

Lamle, SE ;

Pershad, HR ;

Vincent, KA ;

Albracht, SPJ ;

Armstrong, FA .

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2003, 125 (28) :8505-8514

[10] Effect of a dispersion of interfacial electron transfer rates on steady state catalytic electron transport in [NiFe]-hydrogenase and other enzymes [J].

Léger, C ;

Jones, AK ;

Albracht, SPJ ;

Armstrong, FA .

JOURNAL OF PHYSICAL CHEMISTRY B, 2002, 106 (50) :13058-13063

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