Ab initio crystal structure prediction -: I.: Rigid molecules

被引:121
作者
Karamertzanis, PG [1 ]
Pantelides, CC [1 ]
机构
[1] Univ London Imperial Coll Sci Technol & Med, Ctr Proc Syst Engn, Dept Chem Engn & Chem Technol, London SW7 2AZ, England
关键词
crystal structure prediction; polymorphism; lattice energy minimization;
D O I
10.1002/jcc.20165
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
A new methodology for the prediction of molecular crystal structures using only the atomic connectivity of the molecule under consideration is presented. The approach is based on the global minimization of the lattice enthalpy of the crystal. The modeling of the electrostatic interactions is accomplished through a set of distributed charges that are optimally and automatically selected and positioned based on results of quantum mechanical calculations. A four-step global optimization algorithm is used for the identification of the local minima of the lattice enthalpy surface. A parallelized implementation of the algorithm permits a much more extensive search of the solution space than has hitherto been possible, allowing the identification of crystal structures in less frequently occurring space groups and with more than one molecule in the asymmetric unit. The algorithm has been applied successfully to the prediction of the crystal structures of 3-aza-bicyclo(3.3.1)nonane-2,4-dione (P2(1)/a, Z' = 1), allopurinol (P2(1)/c Z' = 1), 1,3,4,6,7,9-hexa-azacycl(3.3.3)azine (Pbca, Z' = 2), and triethylenediamine (P6(3)/m, Z' = 1). In all cases, the experimentally known structure is among the most stable predicted structures, but not necessarily the global minimum. (C) 2004 Wiley Periodicals, Inc.
引用
收藏
页码:304 / 324
页数:21
相关论文
共 61 条
[1]   Applications of the Cambridge Structural Database in organic chemistry and crystal chemistry [J].
Allen, FH ;
Motherwell, WDS .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE CRYSTAL ENGINEERING AND MATERIALS, 2002, 58 :407-422
[2]   The Cambridge Structural Database: a quarter of a million crystal structures and rising [J].
Allen, FH .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 2002, 58 (3 PART 1) :380-388
[3]   The prediction, morphology, and mechanical properties of the polymorphs of paracetamol [J].
Beyer, T ;
Day, GM ;
Price, SL .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (21) :5086-5094
[4]  
Busing W.R., 1981, ORNL5747
[5]   ELECTROSTATIC LATTICE ENERGY IN IONIC-CRYSTALS - OPTIMIZATION OF CONVERGENCE OF EWALD SERIES [J].
CATTI, M .
ACTA CRYSTALLOGRAPHICA SECTION A, 1978, 34 (NOV) :974-979
[6]   High pressure crystal phases of benzene probed by infrared spectroscopy [J].
Ciabini, L ;
Santoro, M ;
Bini, R ;
Schettino, V .
JOURNAL OF CHEMICAL PHYSICS, 2001, 115 (08) :3742-3749
[7]   A theoretical study of the pressure-induced dimerization of C60 fullerene [J].
Dzyabchenko, AV ;
Agafonov, V ;
Davydov, VA .
JOURNAL OF PHYSICAL CHEMISTRY A, 1999, 103 (15) :2812-2820
[8]   METHOD OF CRYSTAL-STRUCTURE SIMILARITY SEARCHING [J].
DZYABCHENKO, AV .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1994, 50 :414-425
[9]  
DZYABCHENKO AV, 2001, PMC USERS GUIDE
[10]   ENCODING AND DECODING HYDROGEN-BOND PATTERNS OF ORGANIC-COMPOUNDS [J].
ETTER, MC .
ACCOUNTS OF CHEMICAL RESEARCH, 1990, 23 (04) :120-126