The Snf2 Homolog Fun30 Acts as a Homodimeric ATP-dependent Chromatin-remodeling Enzyme

被引:63
作者
Awad, Salma [1 ,2 ]
Ryan, Daniel [2 ]
Prochasson, Philippe [3 ]
Owen-Hughes, Tom [2 ]
Hassan, Ahmed H. [1 ]
机构
[1] United Arab Emirates Univ, Dept Biochem, Fac Med & Hlth Sci, Al Ain, U Arab Emirates
[2] Univ Dundee, Wellcome Trust Ctr Gene Regulat & Express, Sch Life Sci, Dundee DD1 5EH, Scotland
[3] Stowers Inst Med Res, Kansas City, MO 64110 USA
基金
英国惠康基金;
关键词
SACCHAROMYCES-CEREVISIAE; TRANSCRIPTIONAL REGULATOR; DNA TRANSLOCATION; PROTEIN COMPLEXES; CHROMOSOME-I; HISTONE; NUCLEOSOME; BINDING; GENES; IDENTIFICATION;
D O I
10.1074/jbc.M109.082149
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The Saccharomyces cerevisiae Fun30 (Function unknown now 30) protein shares homology with an extended family of Snf2-related ATPases. Here we report the purification of Fun30 principally as a homodimer with a molecular mass of about 250 kDa. Biochemical characterization of this complex reveals that it has ATPase activity stimulated by both DNA and chromatin. Consistent with this, it also binds to both DNA and chromatin. The Fun30 complex also exhibits activity in ATP-dependent chromatin remodeling assays. Interestingly, its activity in histone dimer exchange is high relative to the ability to reposition nucleosomes. Fun30 also possesses a weakly conserved CUE motif suggesting that it may interact specifically with ubiquitinylated proteins. However, in vitro Fun30 was found to have no specificity in its interaction with ubiquitinylated histones.
引用
收藏
页码:9477 / 9484
页数:8
相关论文
共 38 条
[1]   SMARCAD1, a novel human helicase family-defining member associated with genetic instability: Cloning, expression, and mapping to 4q22-q23, a band rich in breakpoints and deletion mutants involved in several human diseases [J].
Adra, CN ;
Donato, JL ;
Badovinac, R ;
Syed, F ;
Kheraj, R ;
Cai, HB ;
Moran, C ;
Kolker, MT ;
Turner, H ;
Weremowicz, S ;
Shirakawa, T ;
Morton, CC ;
Schnipper, LE ;
Drews, R .
GENOMICS, 2000, 69 (02) :162-173
[2]   MOLECULAR-CLONING OF CHROMOSOME-I DNA FROM SACCHAROMYCES-CEREVISIAE - ANALYSIS OF THE GENES IN THE FUN38-MAK16-SP07 REGION [J].
BARTON, AB ;
KABACK, DB .
JOURNAL OF BACTERIOLOGY, 1994, 176 (07) :1872-1880
[3]   ATP-dependent nucleosomere modeling [J].
Becker, PB ;
Hörz, W .
ANNUAL REVIEW OF BIOCHEMISTRY, 2002, 71 :247-273
[4]   Histone H2A/H2B dimer exchange by ATP-dependent chromatin remodeling activities [J].
Bruno, M ;
Flaus, A ;
Stockdale, C ;
Rencurel, C ;
Ferreira, H ;
Owen-Hughes, T .
MOLECULAR CELL, 2003, 12 (06) :1599-1606
[5]   Chromatin remodeling: insights and intrigue from single-molecule studies [J].
Cairns, Bradley R. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2007, 14 (11) :989-996
[6]   IDENTIFICATION OF A SACCHAROMYCES-CEREVISIAE HOMOLOG OF THE SNF2 TRANSCRIPTIONAL REGULATOR IN THE DNA-SEQUENCE OF AN 8.6 KB REGION IN THE LTE1-CYS1 INTERVAL ON THE LEFT ARM OF CHROMOSOME-I [J].
CLARK, MW ;
ZHONG, WW ;
KENG, T ;
STORMS, RK ;
BARTON, A ;
KABACK, DB ;
BUSSEY, H .
YEAST, 1992, 8 (02) :133-145
[7]   Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map [J].
Collins, Sean R. ;
Miller, Kyle M. ;
Maas, Nancy L. ;
Roguev, Assen ;
Fillingham, Jeffrey ;
Chu, Clement S. ;
Schuldiner, Maya ;
Gebbia, Marinella ;
Recht, Judith ;
Shales, Michael ;
Ding, Huiming ;
Xu, Hong ;
Han, Junhong ;
Ingvarsdottir, Kristin ;
Cheng, Benjamin ;
Andrews, Brenda ;
Boone, Charles ;
Berger, Shelley L. ;
Hieter, Phil ;
Zhang, Zhiguo ;
Brown, Grant W. ;
Ingles, C. James ;
Emili, Andrew ;
Allis, C. David ;
Toczyski, David P. ;
Weissman, Jonathan S. ;
Greenblatt, Jack F. ;
Krogan, Nevan J. .
NATURE, 2007, 446 (7137) :806-810
[8]   Demonstration of unidirectional single-stranded DNA translocation by PcrA helicase: Measurement of step size and translocation speed [J].
Dillingham, MS ;
Wigley, DB ;
Webb, MR .
BIOCHEMISTRY, 2000, 39 (01) :205-212
[9]   Histone modifications influence the action of Snf2 family remodelling enzymes by different mechanisms [J].
Ferreira, Helder ;
Flaus, Andrew ;
Owen-Hughes, Tom .
JOURNAL OF MOLECULAR BIOLOGY, 2007, 374 (03) :563-579
[10]   Histone tails and the H3 αN helix regulate nucleosome mobility and stability [J].
Ferreira, Helder ;
Somers, Joanna ;
Webster, Ryan ;
Flaus, Andrew ;
Owen-Hughes, Tom .
MOLECULAR AND CELLULAR BIOLOGY, 2007, 27 (11) :4037-4048