Lipari-Szabo mapping: A graphical approach to Lipari-Szabo analysis of NMR relaxation data using reduced spectral density mapping

被引:19
作者
Andrec, M
Montelione, GT
Levy, RM
机构
[1] Rutgers State Univ, Ctr Adv Biotechnol & Med, Piscataway, NJ 08854 USA
[2] Rutgers State Univ, Dept Mol Biol & Biochem, Piscataway, NJ 08854 USA
[3] Rutgers State Univ, Dept Chem, Wright Rieman Labs, Piscataway, NJ 08854 USA
关键词
cold-shock protein A; CspA; protein dynamics;
D O I
10.1023/A:1008302101116
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In this paper, we explore connections between the Lipari-Szabo formalism and reduced spectral density mapping, and show how spectral density estimates can be associated with Lipari-Szabo parameters via a simple geometric construction which we call Lipari-Szabo mapping. This relationship can be used to estimate Lipari-Szabo parameters from spectral density estimates without the need for nonlinear optimization, and to perform 'model selection' in a graphical manner. The Lipari-Szabo map also provides insight into the Lipari-Szabo model, and allows us to determine when a given set of experimental spectral densities are inconsistent with the Lipari-Szabo formalism. Practical applications of Lipari-Szabo mapping in conjunction with more traditional analysis methods are discussed.
引用
收藏
页码:83 / 100
页数:18
相关论文
共 37 条
[1]  
ANDREC C, 2000, IN PRESS J MAGN RESO
[2]   Estimation of dynamic parameters from NMR relaxation data using the Lipari-Szabo model-free approach and Bayesian statistical methods [J].
Andrec, M ;
Montelione, GT ;
Levy, RM .
JOURNAL OF MAGNETIC RESONANCE, 1999, 139 (02) :408-421
[3]  
[Anonymous], 2018, Protein nmr spectroscopy: principles and practice
[4]  
[Anonymous], 1996, NUMERICAL BAYESIAN M, DOI DOI 10.1007/978-1-4612-0717-7
[5]  
Bevington R., 1969, DATA REDUCTION ERROR
[6]  
Brooks C. L., 1988, PROTEINS THEORETICAL
[7]   LONG-RANGE MOTIONAL RESTRICTIONS IN A MULTIDOMAIN ZINC-FINGER PROTEIN FROM ANISOTROPIC TUMBLING [J].
BRUSCHWEILER, R ;
LIAO, XB ;
WRIGHT, PE .
SCIENCE, 1995, 268 (5212) :886-889
[8]   Determining the magnitude of the fully asymmetric diffusion tensor from heteronuclear relaxation data in the absence of structural information [J].
Clore, GM ;
Gronenborn, AM ;
Szabo, A ;
Tjandra, N .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1998, 120 (19) :4889-4890
[9]   DEVIATIONS FROM THE SIMPLE 2-PARAMETER MODEL-FREE APPROACH TO THE INTERPRETATION OF N-15 NUCLEAR MAGNETIC-RELAXATION OF PROTEINS [J].
CLORE, GM ;
SZABO, A ;
BAX, A ;
KAY, LE ;
DRISCOLL, PC ;
GRONENBORN, AM .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1990, 112 (12) :4989-4991
[10]   On the frequency function of xy [J].
Craig, CC .
ANNALS OF MATHEMATICAL STATISTICS, 1936, 7 :1-15