Unfurling Fern Biology in the Genomics Age

被引:71
作者
Barker, Michael S. [1 ,2 ,3 ,4 ]
Wolf, Paul G. [5 ,6 ]
机构
[1] Univ British Columbia, Biodivers Res Ctr, Vancouver, BC, Canada
[2] Univ British Columbia, Dept Bot, Vancouver, BC, Canada
[3] Indiana Univ, Dept Biol, Bloomington, IN 47405 USA
[4] Indiana Univ, Ctr Genom & Bioinformat, Bloomington, IN 47405 USA
[5] Utah State Univ, Dept Biol, Logan, UT 84322 USA
[6] Utah State Univ, Ctr Ecol, Logan, UT 84322 USA
基金
加拿大自然科学与工程研究理事会; 美国国家科学基金会;
关键词
expressed sequence tag; polyploidy; speciation; hybridization; development; HOMOSPOROUS FERN; CHLOROPLAST DNA; NUCLEOTIDE-SEQUENCE; ARABIDOPSIS POLLEN; GENE-EXPRESSION; EVOLUTION; CERATOPTERIS; POLYPLOIDY; PHYLOGENY; REVEAL;
D O I
10.1525/bio.2010.60.3.4
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Twenty-first century technology is addressing ninny of the questions posed by 20th-century biology. Although the new approaches, especially those involving genomic data and biobiformatic tools, were first applied to model organisms, they are now stretching across the tree of life. Here, the review sonic recent revelations in the ferns. We first examine how DNA sequence data have contributed to our understanding of fern phylogeny Vile then address evolution of the fern plastid genome, including reports of high levels of RNA editing. Recent studies ore also shedding light on the evolution of fern nuclear genomes. Initial analyses of genomic data suggest that despite their very high chromosome numbers homosporous ferns may have experienced relatively few rounds of genome duplication. Genomic data are enabling researchers to examine speciation rates and the mechanisms underlying the formation of new fern species. We also describe genetic tools that have been used to study gene function and development in ferns. Recent findings in fern biology are providing insights that are not only pertinent to this major component of the land-flora but can also help to provide ran improved evolutionary context for research on flowering plants.
引用
收藏
页码:177 / 185
页数:9
相关论文
共 67 条
[1]  
[Anonymous], 1993, FLOR N AM N MEX
[2]   Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years [J].
Barker, Michael S. ;
Kane, Nolan C. ;
Matvienko, Marta ;
Kozik, Alexander ;
Michelmore, W. ;
Knapp, Steven J. ;
Rieseberg, Loren H. .
MOLECULAR BIOLOGY AND EVOLUTION, 2008, 25 (11) :2445-2455
[3]   Paleopolyploidy in the Brassicales: Analyses of the Cleome Transcriptome Elucidate the History of Genome Duplications in Arabidopsis and Other Brassicales [J].
Barker, Michael S. ;
Vogel, Heiko ;
Schranz, M. Eric .
GENOME BIOLOGY AND EVOLUTION, 2009, 1 :391-399
[4]  
Barker MS, 2009, AM FERN J, V99, P136
[5]  
BARKER MS, 2008, BOT 2008 C 26 30 JUL
[6]   Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution [J].
Blanc, G ;
Wolfe, KH .
PLANT CELL, 2004, 16 (07) :1679-1691
[7]   Autoimmune response as a mechanism for a Dobzhansky-Muller-type incompatibility syndrome in plants [J].
Bomblies, Kirsten ;
Lempe, Janne ;
Epple, Petra ;
Warthmann, Norman ;
Lanz, Christa ;
Dangl, Jeffery L. ;
Weigel, Detlef .
PLOS BIOLOGY, 2007, 5 (09) :1962-1972
[8]   Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events [J].
Bowers, JE ;
Chapman, BA ;
Rong, JK ;
Paterson, AH .
NATURE, 2003, 422 (6930) :433-438
[9]   HOMOEOLOGOUS HETEROZYGOSITY AND RECOMBINATION IN THE FERN PTERIDIUM-AQUILINUM [J].
CHAPMAN, RH ;
KLEKOWSKI, EJ ;
SELANDER, RK .
SCIENCE, 1979, 204 (4398) :1207-1209
[10]   PHYLOGENETIC IMPLICATIONS OF CHLOROPLAST DNA VARIATION IN THE CYATHEACEAE .1. [J].
CONANT, DS ;
STEIN, DB ;
VALINSKI, AEC ;
SUDARSANAM, P ;
AHEARN, ME .
SYSTEMATIC BOTANY, 1994, 19 (01) :60-72