Adaptive walks by the fittest among finite random mutants on a Mt. Fuji-type fitness landscape - II. Effect of small non-additivity

被引:16
作者
Aita, T
Husimi, Y [1 ]
机构
[1] Saitama Univ, Dept Funct Mat Sci, Urawa, Saitama 338, Japan
[2] Novartis Pharma KK, Takarazuka Res Inst, Takarazuka, Hyogo 665, Japan
关键词
fitness landscape; protein sequence space; mutational additivity; adaptive walk; mutation-selection-random drift balance;
D O I
10.1007/s002850000046
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
We examined properties of adaptive walks by the fittest on "rough Mt. Fuji-type" fitness landscapes, which are modeled by superposing small uncorrelated random component on an additive fitness landscape. A single adaptive walk is carried out by repetition of the evolution cycle composed of (1) mutagenesis process that produces random d-fold point mutants of population size N and (2) selection process that picks out the fittest mutant among them. To comprehend trajectories of the walkers, the fitness landscape is mapped into a (x, y, z)-space, where x, y and z represent, respectively, normalized Hamming distance from the peak on the additive fitness landscape, scaled additive fitness and scaled non-additive fitness. Thus a single adaptive walk is expressed as the dynamics of a particle in this space. We drew the "hill-climbing" vector field, where each vector represents the most probable step for a walker in a single step. Almost all of the walkers are expected to move along streams of vectors existing on a particular surface that overlies the (x, y)-plane, toward the neighborhood of a characteristic point at which a mutation-selection-random drift balance is reached. We could theoretically predict this reachable point in the case of random sampling search strategy.
引用
收藏
页码:207 / 231
页数:25
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