Fast kinetic studies by fluorescence correlation spectroscopy of PNA-DNA interactions

被引:8
作者
Aich, P [1 ]
Nielsen, P [1 ]
Rigler, R [1 ]
机构
[1] UNIV COPENHAGEN, PANUM INST, CTR BIOMOL RECOGNIT, DEPT BIOCHEM B, DK-2200 COPENHAGEN N, DENMARK
关键词
D O I
10.1080/07328319708002924
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The kinetics of the hybridization of fluorescently labeled Peptide nucleic acid (PNA) with its complementary single strand DNA templates and strand displacement from the same DNA duplexed with its 18-nucleotide(nt) long sequencing primer was measured. We used M13mp18 (+)ssDNA as template and the PNA molecule was 18-nt long with the identical sequence as to that of the sequencing primer of the DNA template. Kinetic studies show that hybridization was approximately 100-fold faster than the oligonucleotide-displacement at room temperature.
引用
收藏
页码:609 / 615
页数:7
相关论文
共 13 条
[1]   DNA UNWINDING UPON STRAND-DISPLACEMENT BINDING OF A THYMINE-SUBSTITUTED POLYAMIDE TO DOUBLE-STRANDED DNA [J].
CHERNY, DY ;
BELOTSERKOVSKII, BP ;
FRANKKAMENETSKII, MD ;
EGHOLM, M ;
BUCHARDT, O ;
BERG, RH ;
NIELSEN, PE .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1993, 90 (05) :1667-1670
[2]  
CHRISTENSEN L, 1995, J PEPT SCI, V1, P175, DOI DOI 10.1002/PSC.310010304
[3]   PNA HYBRIDIZES TO COMPLEMENTARY OLIGONUCLEOTIDES OBEYING THE WATSON-CRICK HYDROGEN-BONDING RULES [J].
EGHOLM, M ;
BUCHARDT, O ;
CHRISTENSEN, L ;
BEHRENS, C ;
FREIER, SM ;
DRIVER, DA ;
BERG, RH ;
KIM, SK ;
NORDEN, B ;
NIELSEN, PE .
NATURE, 1993, 365 (6446) :566-568
[4]   SORTING SINGLE MOLECULES - APPLICATION TO DIAGNOSTICS AND EVOLUTIONARY BIOTECHNOLOGY [J].
EIGEN, M ;
RIGLER, R .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (13) :5740-5747
[5]   Peptide nucleic acids (PNA): Synthesis, properties and potential applications [J].
Hyrup, B ;
Nielsen, PE .
BIOORGANIC & MEDICINAL CHEMISTRY, 1996, 4 (01) :5-23
[6]  
MASATAKA K, 1995, NUCLEIC ACIDS RES, V23, P1795
[7]  
Mets U, 1994, J Fluoresc, V4, P259, DOI 10.1007/BF01878461
[8]   SEQUENCE-SELECTIVE RECOGNITION OF DNA BY STRAND DISPLACEMENT WITH A THYMINE-SUBSTITUTED POLYAMIDE [J].
NIELSEN, PE ;
EGHOLM, M ;
BERG, RH ;
BUCHARDT, O .
SCIENCE, 1991, 254 (5037) :1497-1500
[9]  
Nielsen Peter E., 1994, Journal of Molecular Recognition, V7, P165, DOI 10.1002/jmr.300070303
[10]  
RIGLER R, 1993, EUR BIOPHYS J BIOPHY, V22, P169, DOI 10.1007/BF00185777