An EST resource for cassava and other species of Euphorbiaceae

被引:34
作者
Anderson, JV
Delseny, M
Fregene, MA
Jorge, V
Mba, C
Lopez, C
Restrepo, S
Soto, M
Piegu, B
Verdier, V
Cooke, R
Tohme, J
Horvath, DP
机构
[1] USDA ARS, Biosci Res Lab, Fargo, ND 58105 USA
[2] Univ Perpignan, Genome & Plant Dev Lab, CNRS, UMR 5096,IRD,UP, F-66860 Perpignan, France
[3] Ctr Int Agr Trop, Cali, Colombia
基金
日本学术振兴会;
关键词
cassava; genomics; leafy spurge; stress;
D O I
10.1007/s11103-004-5046-6
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Cassava (Manihot esculenta) is a major food staple for nearly 600 million people in Africa. Asia. and Latin America. Major losses in yield result from biotic and abiotic stresses that include diseases such as Cassava Mosaic Disease (CMD) and Cassava Bacterial Blight (CBB), drought. and acid soils. Additional losses also occur from deterioration during the post-harvest storage of roots. To help cassava breeders overcome these obstacles, the scientific community has turned to modern genomics approaches to identify key genetic characteristics associated with resistance to these yield-limiting factors. One approach for developing a genomics program requires the development of ESTs (expressed sequence tags). To date, nearly 23000 ESTs have been developed from various cassava tissues.. and genotypes. Preliminary analysis indicates existing EST resources contain at least 6000-7000 unigenes. Data presented in this report indicate that the cassava ESTs will be a valuable resource for the study of genetic diversity, stress resistance. and growth and development, not only in cassava, but also other members of the Euphorblaceae family.
引用
收藏
页码:527 / 539
页数:13
相关论文
共 51 条
[1]   Identification of the SAAT gene involved in strawberry flavor biogenesis by use of DNA microarrays [J].
Aharoni, A ;
Keizer, LCP ;
Bouwmeester, HJ ;
Sun, ZK ;
Alvarez-Huerta, M ;
Verhoeven, HA ;
Blaas, J ;
van Houwelingen, AMML ;
De Vos, RCH ;
van der Voet, H ;
Jansen, RC ;
Guis, M ;
Mol, J ;
Davis, RW ;
Schena, M ;
van Tunen, AJ ;
O'Connell, AP .
PLANT CELL, 2000, 12 (05) :647-661
[2]   Genetic mapping of a dominant gene conferring resistance to cassava mosaic disease [J].
Akano, AO ;
Dixon, AGO ;
Mba, C ;
Barrera, E ;
Fregene, M .
THEORETICAL AND APPLIED GENETICS, 2002, 105 (04) :521-525
[3]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[4]  
Anderson JV, 2001, WEED SCI, V49, P581, DOI 10.1614/0043-1745(2001)049[0581:RCROTR]2.0.CO
[5]  
2
[6]  
ANDERSON JV, 2001, 5 INT SCI M CASS BIO
[7]   Analysis of the genome sequence of the flowering plant Arabidopsis thaliana [J].
Kaul, S ;
Koo, HL ;
Jenkins, J ;
Rizzo, M ;
Rooney, T ;
Tallon, LJ ;
Feldblyum, T ;
Nierman, W ;
Benito, MI ;
Lin, XY ;
Town, CD ;
Venter, JC ;
Fraser, CM ;
Tabata, S ;
Nakamura, Y ;
Kaneko, T ;
Sato, S ;
Asamizu, E ;
Kato, T ;
Kotani, H ;
Sasamoto, S ;
Ecker, JR ;
Theologis, A ;
Federspiel, NA ;
Palm, CJ ;
Osborne, BI ;
Shinn, P ;
Conway, AB ;
Vysotskaia, VS ;
Dewar, K ;
Conn, L ;
Lenz, CA ;
Kim, CJ ;
Hansen, NF ;
Liu, SX ;
Buehler, E ;
Altafi, H ;
Sakano, H ;
Dunn, P ;
Lam, B ;
Pham, PK ;
Chao, Q ;
Nguyen, M ;
Yu, GX ;
Chen, HM ;
Southwick, A ;
Lee, JM ;
Miranda, M ;
Toriumi, MJ ;
Davis, RW .
NATURE, 2000, 408 (6814) :796-815
[8]   A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome [J].
Blanc, G ;
Hokamp, K ;
Wolfe, KH .
GENOME RESEARCH, 2003, 13 (02) :137-144
[9]   DBEST - DATABASE FOR EXPRESSED SEQUENCE TAGS [J].
BOGUSKI, MS ;
LOWE, TMJ ;
TOLSTOSHEV, CM .
NATURE GENETICS, 1993, 4 (04) :332-333
[10]   Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events [J].
Bowers, JE ;
Chapman, BA ;
Rong, JK ;
Paterson, AH .
NATURE, 2003, 422 (6930) :433-438