The role of modifications in codon discrimination by tRNALys UUU

被引:279
作者
Murphy, FV
Ramakrishnan, V
Malkiewicz, A
Agris, PF
机构
[1] MRC, Mol Biol Lab, Cambridge CB2 2QH, England
[2] Tech Univ Lodz, Inst Organ Chem, PL-90924 Lodz, Poland
[3] N Carolina State Univ, Dept Mol & Struct Biochem, Raleigh, NC 27695 USA
关键词
D O I
10.1038/nsmb861
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The natural modification of specific nucleosides in many tRNAs is essential during decoding of mRNA by the ribosome. For example, tRNA(UUU)(Lys) requires the modification N6-threonylcarbamoyladenosine at position 37 (t(6)A37), adjacent and 3 to the anticodon, to bind AAA in the A site of the ribosomal 30S subunit. Moreover, it can only bind both AAA and AAG lysine codons when doubly modified with t(6)A37 and either 5-methylaminomethyluridine or 2-thiouridine at the wobble position (mnm(5)U34 or s(2)U34). Here we report crystal structures of modified tRNA anticodon stem-loops bound to the 30S ribosomal subunit with lysine codons in the A site. These structures allow the rationalization of how modifications in the anticodon loop enable decoding of both lysine codons AAA and AAG.
引用
收藏
页码:1186 / 1191
页数:6
相关论文
共 46 条
[1]   Decoding the genome: a modified view [J].
Agris, PF .
NUCLEIC ACIDS RESEARCH, 2004, 32 (01) :223-238
[2]   WOBBLE POSITION MODIFIED NUCLEOSIDES EVOLVED TO SELECT TRANSFER-RNA CODON RECOGNITION - A MODIFIED-WOBBLE HYPOTHESIS [J].
AGRIS, PF .
BIOCHIMIE, 1991, 73 (11) :1345-1349
[3]   SITE-SELECTED INTRODUCTION OF MODIFIED PURINE AND PYRIMIDINE RIBONUCLEOSIDES INTO RNA BY AUTOMATED PHOSPHORAMIDITE CHEMISTRY [J].
AGRIS, PF ;
MALKIEWICZ, A ;
KRASZEWSKI, A ;
EVERETT, K ;
NAWROT, B ;
SOCHACKA, E ;
JANKOWSKA, J ;
GUENTHER, R .
BIOCHIMIE, 1995, 77 (1-2) :125-134
[4]   Singly and bifurcated hydrogen-bonded base-pairs in tRNA anticodon hairpins and ribozymes [J].
Auffinger, P ;
Westhof, E .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 292 (03) :467-483
[5]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[6]   Specificity of RNA-RNA helix recognition [J].
Battle, DJ ;
Doudna, JA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (18) :11676-11681
[7]   The crystal structure of HIV reverse-transcription primer tRNA(Lys,3) shows a canonical anticodon loop [J].
Bénas, P ;
Bec, G ;
Keith, G ;
Marquet, R ;
Ehresmann, C ;
Ehresmann, B ;
Dumas, P .
RNA, 2000, 6 (10) :1347-1355
[8]  
Bjork Glenn R., 1995, P165
[9]  
Brunger AT, 1998, ACTA CRYSTALLOGR D, V54, P905, DOI 10.1107/s0907444998003254
[10]   Nuclear magnetic resonance spectroscopy and molecular modeling reveal that different hydrogen bonding patterns are possible for G•U pairs:: One hydrogen bond for each G•U pair in r(GGC(GU)under-bar-GCC)2 and two for each G•U pair in r(GAG(UG)under-bar-CUC)2 [J].
Chen, XY ;
McDowell, JA ;
Kierzek, R ;
Krugh, TR ;
Turner, DH .
BIOCHEMISTRY, 2000, 39 (30) :8970-8982