CD-HIT Suite: a web server for clustering and comparing biological sequences

被引：2012

作者：

Huang, Ying ^{[1
]}

Niu, Beifang ^{[1
]}

Gao, Ying ^{[1
]}

Fu, Limin ^{[1
]}

Li, Weizhong ^{[1
]}

机构：

[1] Univ Calif San Diego, Calif Inst Telecommun & Informat Technol, La Jolla, CA 92093 USA

来源：

BIOINFORMATICS | 2010年 / 26卷 / 05期

基金：

美国国家卫生研究院;

关键词：

PROTEIN;

D O I：

10.1093/bioinformatics/btq003

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

CD-HIT is a widely used program for clustering and comparing large biological sequence datasets. In order to further assist the CD-HIT users, we significantly improved this program with more functions and better accuracy, scalability and flexibility. Most importantly, we developed a new web server, CD-HIT Suite, for clustering a user-uploaded sequence dataset or comparing it to another dataset at different identity levels. Users can now interactively explore the clusters within web browsers. We also provide downloadable clusters for several public databases (NCBI NR, Swissprot and PDB) at different identity levels.

引用

页码：680 / 682

页数：3

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