EuPathDB: a portal to eukaryotic pathogen databases

被引：99

作者：

Aurrecoechea, Cristina ^{[2
]}

Brestelli, John ^{[1
,3
]}

Brunk, Brian P. ^{[1
,4
]}

Fischer, Steve ^{[1
,3
]}

Gajria, Bindu ^{[1
,4
]}

Gao, Xin ^{[1
,4
]}

Gingle, Alan ^{[5
]}

Grant, Greg ^{[1
,3
]}

Harb, Omar S. ^{[1
,4
]}

Heiges, Mark ^{[2
]}

Innamorato, Frank ^{[1
,3
]}

Iodice, John ^{[1
,3
]}

Kissinger, Jessica C. ^{[2
,6
]}

Kraemer, Eileen T. ^{[7
]}

Li, Wei ^{[1
,4
]}

Miller, John A.

Nayak, Vishal ^{[1
,3
]}

Pennington, Cary ^{[2
]}

Pinney, Deborah F. ^{[1
,3
]}

Roos, David S. ^{[4
]}

Ross, Chris ^{[2
]}

Srinivasamoorthy, Ganesh ^{[2
]}

Stoeckert, Christian J., Jr. ^{[1
,3
]}

Thibodeau, Ryan ^{[2
]}

Treatman, Charles ^{[1
,4
]}

Wang, Haiming ^{[2
]}

机构：

[1] Univ Penn, Penn Ctr Bioinformat, Philadelphia, PA 19104 USA

[2] Univ Georgia, Ctr Trop & Emerging Global Dis, Athens, GA 30602 USA

[3] Univ Penn, Dept Genet, Sch Med, Philadelphia, PA 19104 USA

[4] Univ Penn, Dept Biol, Philadelphia, PA 19104 USA

[5] Univ Georgia, Ctr Appl Genet Technol, Athens, GA 30602 USA

[6] Univ Georgia, Dept Genet, Athens, GA 30602 USA

[7] Univ Georgia, Dept Comp Sci, Athens, GA 30602 USA

来源：

NUCLEIC ACIDS RESEARCH | 2010年 / 38卷

基金：

美国国家卫生研究院;

关键词：

RESOURCES;

D O I：

10.1093/nar/gkp941

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

EuPathDB (http://EuPathDB.org; formerly ApiDB) is an integrated database covering the eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera. The most recent release of EuPathDB includes updates and changes affecting data content, infrastructure and the user interface, improving data access and enhancing the user experience. EuPathDB currently supports more than 80 searches and the recently-implemented 'search strategy' system enables users to construct complex multi-step searches via a graphical interface. Search results are dynamically displayed as the strategy is constructed or modified, and can be downloaded, saved, revised, or shared with other database users.

引用

页码：D415 / D419

页数：5

共 7 条

[1] ApiDB: integrated resources for the apicomplexan bioinformatics resource center [J].

Aurrecoechea, Cristina ;

Heiges, Mark ;

Wang, Haiming ;

Wang, Zhiming ;

Fischer, Steve ;

Rhodes, Philippa ;

Miller, John ;

Kraemer, Eileen ;

Stoeckert, Christian J., Jr. ;

Roos, David S. ;

Kissinger, Jessica C. .

NUCLEIC ACIDS RESEARCH, 2007, 35 :D427-D430

[2] GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis [J].

Aurrecoechea, Cristina ;

Brestelli, John ;

Brunk, Brian P. ;

Carlton, Jane M. ;

Dommer, Jennifer ;

Fischer, Steve ;

Gajria, Bindu ;

Gao, Xin ;

Gingle, Alan ;

Grant, Greg ;

Harb, Omar S. ;

Heiges, Mark ;

Innamorato, Frank ;

Iodice, John ;

Kissinger, Jessica C. ;

Kraemer, Eileen ;

Li, Wei ;

Miller, John A. ;

Morrison, Hilary G. ;

Nayak, Vishal ;

Pennington, Cary ;

Pinney, Deborah F. ;

Roos, David S. ;

Ross, Chris ;

Stoeckert, Christian J., Jr. ;

Sullivan, Steven ;

Treatman, Charles ;

Wang, Haiming .

NUCLEIC ACIDS RESEARCH, 2009, 37 :D526-D530

[3] PlasmoDB: a functional genomic database for malaria parasites [J].

Aurrecoechea, Cristina ;

Brestelli, John ;

Brunk, Brian P. ;

Dommer, Jennifer ;

Fischer, Steve ;

Gajria, Bindu ;

Gao, Xin ;

Gingle, Alan ;

Grant, Greg ;

Harb, Omar S. ;

Heiges, Mark ;

Innamorato, Frank ;

Iodice, John ;

Kissinger, Jessica C. ;

Kraemer, Eileen ;

Li, Wei ;

Miller, John A. ;

Nayak, Vishal ;

Pennington, Cary ;

Pinney, Deborah F. ;

Roos, David S. ;

Ross, Chris ;

Stoeckert, Christian J., Jr. ;

Treatman, Charles ;

Wang, Haiming .

NUCLEIC ACIDS RESEARCH, 2009, 37 :D539-D543

[4] OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups [J].

Chen, Feng ;

Mackey, Aaron J. ;

Stoeckert, Christian J., Jr. ;

Roos, David S. .

NUCLEIC ACIDS RESEARCH, 2006, 34 :D363-D368

[5] Dissecting apicoplast targeting in the malaria parasite Plasmodium falciparum [J].

Foth, BJ ;

Ralph, SA ;

Tonkin, CJ ;

Struck, NS ;

Fraunholz, M ;

Roos, DS ;

Cowman, AF ;

McFadden, GI .

SCIENCE, 2003, 299 (5607) :705-708

[6] ToxoDB:: an integrated Toxoplasma gondii database resource [J].

Gajria, Bindu ;

Bahl, Amit ;

Brestelli, John ;

Dommer, Jennifer ;

Fischer, Steve ;

Gao, Xin ;

Heiges, Mark ;

Iodice, John ;

Kissinger, Jessica C. ;

Mackey, Aaron J. ;

Pinney, Deborah F. ;

Roos, David S. ;

Stoeckert, Christian J., Jr. ;

Wang, Haiming ;

Brunk, Brian P. .

NUCLEIC ACIDS RESEARCH, 2008, 36 :D553-D556

[7] CryptoDB:: a Cryptosporidium bioinformatics resource update [J].

Heiges, Mark ;

Wang, Haiming ;

Robinson, Edward ;

Aurrecoechea, Cristina ;

Gao, Xin ;

Kaluskar, Nivedita ;

Rhodes, Philippa ;

Wang, Sammy ;

He, Cong-Zhou ;

Su, Yanqi ;

Miller, John ;

Kraemer, Eileen ;

Kissinger, Jessica C. .

NUCLEIC ACIDS RESEARCH, 2006, 34 :D419-D422

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