SusG: A Unique Cell-Membrane-Associated α-Amylase from a Prominent Human Gut Symbiont Targets Complex Starch Molecules

被引:109
作者
Koropatkin, Nicole M. [1 ]
Smith, Thomas J. [1 ]
机构
[1] Donald Danforth Plant Sci Ctr, St Louis, MO 63132 USA
关键词
CARBOHYDRATE-BINDING MODULES; X-RAY-STRUCTURE; CRYSTAL-STRUCTURE; CYCLODEXTRIN GLYCOSYLTRANSFERASE; BACTEROIDES-THETAIOTAOMICRON; 3-DIMENSIONAL STRUCTURE; STRUCTURAL-ANALYSIS; FUNCTIONAL-ANALYSIS; SUBSTRATE COMPLEX; PROTEIN;
D O I
10.1016/j.str.2009.12.010
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
SusG is an alpha-amylase and part of a large protein complex on the outer surface of the bacterial cell and plays a major role in carbohydrate acquisition by the animal gut microbiota. Presented here, the atomic structure of SusG has an unusual extended, bilobed structure composed of amylase at one end and an unprecedented internal carbohydrate-binding motif at the other. Structural studies further demonstrate that the carbohydrate-binding motif binds maltooligosaccharide distal to, and on the opposite side of, the amylase catalytic site. SusG has an additional starch-binding site on the amylase domain immediately adjacent to the active cleft. Mutagenesis analysis demonstrates that these two additional starch-binding sites appear to play a role in catabolism of insoluble starch. However, elimination of these sites has only a limited effect, suggesting that they may have a more important role in product exchange with other Sus components.
引用
收藏
页码:200 / 215
页数:16
相关论文
共 74 条
[1]
Complex structures of Thermoactinomyces vulgaris R-47 α-amylase 1 with malto-oligosaccharides demonstrate the role of domain N acting as a starch-binding domain [J].
Abe, A ;
Tonozuka, T ;
Sakano, Y ;
Kamitori, S .
JOURNAL OF MOLECULAR BIOLOGY, 2004, 335 (03) :811-822
[2]
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[3]
BIOCHEMICAL-EVIDENCE THAT STARCH BREAKDOWN BY BACTEROIDES-THETAIOTAOMICRON INVOLVES OUTER-MEMBRANE STARCH-BINDING SITES AND PERIPLASMIC STARCH-DEGRADING ENZYMES [J].
ANDERSON, KL ;
SALYERS, AA .
JOURNAL OF BACTERIOLOGY, 1989, 171 (06) :3192-3198
[4]
GENETIC-EVIDENCE THAT OUTER-MEMBRANE BINDING OF STARCH IS REQUIRED FOR STARCH UTILIZATION BY BACTEROIDES-THETAIOTAOMICRON [J].
ANDERSON, KL ;
SALYERS, AA .
JOURNAL OF BACTERIOLOGY, 1989, 171 (06) :3199-3204
[5]
Host-bacterial mutualism in the human intestine [J].
Bäckhed, F ;
Ley, RE ;
Sonnenburg, JL ;
Peterson, DA ;
Gordon, JI .
SCIENCE, 2005, 307 (5717) :1915-1920
[6]
THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[7]
Three-way stabilization of the covalent intermediate in amylomaltase, an α-amylase-like transglycosylase [J].
Barends, Thomas R. M. ;
Bultema, Jelle B. ;
Kaper, Thijs ;
van der Maarel, Marc J. E. C. ;
Dijkhuizen, Lubbert ;
Dijkstra, Bauke W. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2007, 282 (23) :17242-17249
[8]
AMYLASES, ALPHA AND BETA [J].
BERNFELD, P .
METHODS IN ENZYMOLOGY, 1955, 1 :149-158
[9]
Functional genomic and metabolic studies of the adaptations of a prominent adult human gut symbiont, Bacteroides thetaiotaomicron, to the suckling period [J].
Bjursell, Magnus K. ;
Martens, Eric C. ;
Gordon, Jeffrey I. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2006, 281 (47) :36269-36279
[10]
A structural and functional analysis of α-glucan recognition by family 25 and 26 carbohydrate-binding modules reveals a conserved mode of starch recognition [J].
Boraston, AB ;
Healey, M ;
Klassen, J ;
Ficko-Blean, E ;
van Bueren, AL ;
Law, V .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2006, 281 (01) :587-598