SAGEmap: A public gene expression resource

被引:320
作者
Lash, AE [1 ]
Tolstoshev, CM
Wagner, L
Schuler, GD
Strausberg, RL
Riggins, GJ
Altschul, SF
机构
[1] Natl Lib Med, Natl Ctr Biotechnol Informat, NIH, Bethesda, MD 20894 USA
[2] Duke Univ, Med Ctr, Dept Pathol, Durham, NC 27710 USA
[3] NCI, NIH, Bethesda, MD 20894 USA
关键词
D O I
10.1101/gr.10.7.1051
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We have constructed a public gene expression data repository and online data access and analysis, WWW and FTP sites for serial analysis of gene expression (SAGE) data. The WWW and FTP components of this resource, SAGEmap, are located at http://www.ncbi.nlm.nih.gov/sage and ftp://ncbi.nlm.nih.gov/pub/sage, respectively. We herein describe SAGE data submission procedures, the construction and characteristics of SAGE tags to gene assignments, the derivation and use of a novel statistical test designed specifically for differential-type analyses of SAGE data, and the organization and use of this resource.
引用
收藏
页码:1051 / 1060
页数:10
相关论文
共 13 条
  • [1] Toward the development of a gene index to the human genome: An assessment of the nature of high-throughput EST sequence data
    Aaronson, JS
    Eckman, B
    Blevins, RA
    Borkowski, JA
    Myerson, J
    Imran, S
    Elliston, KO
    [J]. GENOME RESEARCH, 1996, 6 (09): : 829 - 845
  • [2] The significance of digital gene expression profiles
    Audic, S
    Claverie, JM
    [J]. GENOME RESEARCH, 1997, 7 (10): : 986 - 995
  • [3] DBEST - DATABASE FOR EXPRESSED SEQUENCE TAGS
    BOGUSKI, MS
    LOWE, TMJ
    TOLSTOSHEV, CM
    [J]. NATURE GENETICS, 1993, 4 (04) : 332 - 333
  • [4] Characterization of gene expression in resting and activated mast cells
    Chen, HX
    Centola, M
    Altschul, SF
    Metzger, H
    [J]. JOURNAL OF EXPERIMENTAL MEDICINE, 1998, 188 (09) : 1657 - 1668
  • [5] Exploring the metabolic and genetic control of gene expression on a genomic scale
    DeRisi, JL
    Iyer, VR
    Brown, PO
    [J]. SCIENCE, 1997, 278 (5338) : 680 - 686
  • [6] Base-calling of automated sequencer traces using phred.: I.: Accuracy assessment
    Ewing, B
    Hillier, L
    Wendl, MC
    Green, P
    [J]. GENOME RESEARCH, 1998, 8 (03): : 175 - 185
  • [7] Generation and analysis of 280,000 human expressed sequence tags
    Hillier, L
    Lennon, G
    Becker, M
    Bonaldo, MF
    Chiapelli, B
    Chissoe, S
    Dietrich, N
    DuBuque, T
    Favello, A
    Gish, W
    Hawkins, M
    Hultman, M
    Kucaba, T
    Lacy, M
    Le, M
    Le, N
    Mardis, E
    Moore, B
    Morris, M
    Parsons, J
    Prange, C
    Rifkin, L
    Rohlfing, T
    Schellenberg, K
    Soares, MB
    Tan, F
    ThierryMeg, J
    Trevaskis, E
    Underwood, K
    Wohldman, P
    Waterston, R
    Wilson, R
    Marra, M
    [J]. GENOME RESEARCH, 1996, 6 (09) : 807 - 828
  • [8] Lal A, 1999, CANCER RES, V59, P5403
  • [9] A model for p53-induced apoptosis
    Polyak, K
    Xia, Y
    Zweier, JL
    Kinzler, KW
    Vogelstein, B
    [J]. NATURE, 1997, 389 (6648) : 300 - 305
  • [10] New opportunities for uncovering the molecular basis of cancer
    Strausberg, RL
    Dahl, CA
    Klausner, RD
    [J]. NATURE GENETICS, 1997, 15 (Suppl 4) : 415 - 416