Numerical integration of the equations of motion for rigid polyatomics: The matrix method

被引:22
作者
Omelyan, IP [1 ]
机构
[1] Natl Acad Sci Ukraine, Inst Condensed Matter Phys, UA-290011 Lvov, Ukraine
关键词
numerical algorithms; equations of motion; computer techniques;
D O I
10.1016/S0010-4655(98)00024-1
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
A new scheme for numerical integration of motion for classical systems composed of rigid polyatomic molecules is proposed. The scheme is based on a matrix representation of the rotational degrees of freedom. The equations of motion are integrated within the Verlet framework in velocity form. It is shown that, contrary to previous methods, in the approach introduced the rigidity of molecules can be conserved automatically without any additional transformations. A comparison of various techniques with respect to numerical stability is made. (C) 1998 Published by Elsevier Science B.V.
引用
收藏
页码:171 / 183
页数:13
相关论文
共 30 条
[1]   A NEW RIGID MOTION ALGORITHM FOR MD SIMULATIONS [J].
AHLRICHS, R ;
BRODE, S .
COMPUTER PHYSICS COMMUNICATIONS, 1986, 42 (01) :59-64
[2]  
Allen M. P., 1987, Computer Simulation of Liquids, DOI DOI 10.1093/OSO/9780198803195.001.0001
[3]  
[Anonymous], CCP5 INFORM Q
[4]   SIMULATION OF DIATOMIC HOMONUCLEAR LIQUIDS [J].
BAROJAS, J ;
LEVESQUE, D ;
QUENTREC, B .
PHYSICAL REVIEW A, 1973, 7 (03) :1092-1105
[5]   SOME MULTISTEP METHODS FOR USE IN MOLECULAR-DYNAMICS CALCULATIONS [J].
BEEMAN, D .
JOURNAL OF COMPUTATIONAL PHYSICS, 1976, 20 (02) :130-139
[6]   GENERALIZED HYDRODYNAMICS AND THE ACOUSTIC MODES OF WATER - THEORY AND SIMULATION RESULTS [J].
BERTOLINI, D ;
TANI, A .
PHYSICAL REVIEW E, 1995, 51 (02) :1091-1118
[7]   PROPERTIES OF LIQUID-NITROGEN .4. COMPUTER-SIMULATION [J].
CHEUNG, PSY ;
POWLES, JG .
MOLECULAR PHYSICS, 1975, 30 (03) :921-949
[8]   MOLECULAR-DYNAMICS OF RIGID SYSTEMS IN CARTESIAN COORDINATES A GENERAL FORMULATION [J].
CICCOTTI, G ;
FERRARIO, M ;
RYCKAERT, JP .
MOLECULAR PHYSICS, 1982, 47 (06) :1253-1264
[9]   REPRESENTATION OF ORIENTATION SPACE [J].
EVANS, DJ .
MOLECULAR PHYSICS, 1977, 34 (02) :317-325
[10]   SINGULARITY FREE ALGORITHM FOR MOLECULAR-DYNAMICS SIMULATION OF RIGID POLYATOMICS [J].
EVANS, DJ ;
MURAD, S .
MOLECULAR PHYSICS, 1977, 34 (02) :327-331