Correlated motions of successive amide N-H bonds in proteins

被引:49
作者
Pelupessy, P
Ravindranathan, S
Bodenhausen, G
机构
[1] Ecole Normale Super, CNRS, Dept Chim, F-75231 Paris 05, France
[2] Ecole Polytech Fed Lausanne, BCH, Inst Chim Mol & Biol, CH-1015 Lausanne, Switzerland
关键词
cross-correlation; dihedral angles; NMR; protein dynamics;
D O I
10.1023/A:1023076212536
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
New nuclear magnetic resonance (NMR) methods are described for the measurement of cross-correlation rates of zero- and double-quantum coherences involving two nitrogen nuclei belonging to successive amino acids in proteins and peptides. Rates due to the concerted fluctuations of two NHN dipole-dipole interactions and to the correlated modulations of two nitrogen chemical shift anisotropies have been obtained in a sample of doubly labeled Ubiquitin. Ambiguities in the determination of dihedral angles can be lifted by comparison of different rates. By defining a heuristic order parameter, experimental rates can be compared with those expected for a rigid molecule. The cross-correlation order parameter that can be derived from a model-free approach can be separated into structural and dynamic contributions.
引用
收藏
页码:265 / 280
页数:16
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