We describe the functional consequences of mutations in the linker between the second and third transmembrane segments (M2-M3L) of muscle acetylcholine receptors at the single-channel level. Hydrophobic mutations (Ile, Cys, and Phe) placed near the middle of the linker of the or subunit (alpha S269) prolong apparent openings elicited by low concentrations of acetylcholine (ACh), whereas hydrophilic mutations (Asp, Lys, and Gin) are without: effect. Because the gating kinetics of the alpha S269I receptor (a congenital myasthenic syndrome mutant) in the presence of ACh are too fast, choline was used as the agonist. This revealed an similar to 92-fold increased gating equilibrium constant, which is consistent with all similar to 10-fold decreased EC50 in the presence of ACh. With choline, this mutation accelerates channel opening similar to 28-fold, slows channel closing similar to 3-fold, but does not affect agonist binding to the closed state. These ratios suggest that, with ACh, alpha S269I acetylcholine receptors open at a rate of similar to 1.4 X 10(6) s(-1) and close at a rate of similar to 760 s(-1). These gating rate constants, together with the measured duration of apparent openings at low ACh concentrations, further suggest that ACh dissociates from the diliganded open receptor at a rate of similar to 140 s(-1). Ile mutations at positions flanking alpha S269 impair, rather than enhance, channel gating. Inserting or deleting one residue from this linker in the alpha subunit increased and decreased, respectively, the apparent open time approximately twofold. Contrary to the alpha S269I mutation, Ile mutations at equivalent positions of the beta, epsilon, and delta subunits do not affect apparent open-channel lifetimes. However, in beta and epsilon, shifting the mutation one residue to the NH2-terminal end enhances channel gating. The overall results indicate that this linker is a control element whose hydrophobicity determines channel gating in a position- and subunit-dependent manner. Characterization of the transition state of the gating reaction suggests that during channel opening the M2-M3L of the alpha subunit: moves before the corresponding linkers of the beta and epsilon subunits.