Robustness and evolvability in genetic regulatory networks

被引:174
作者
Aldana, Maximino
Balleza, Enrique
Kauffman, Stuart
Resendiz, Osbaldo
机构
[1] Univ Nacl Autonoma Mexico, Ctr Ciencias Fis, Cuernavaca, Morelos, Mexico
[2] Univ Calgary, Inst Biocomplex & Informat, Calgary, AB T2N 1N4, Canada
[3] Univ Nacl Autonoma Mexico, Ctr Ciencias Genom, Cuernavaca, Morelos, Mexico
[4] UNM, Consortium Amer Interdisciplinary Sci, Albuquerque, NM USA
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
gene regulatory networks; robustness; evolvability; gene divergence; gene duplication;
D O I
10.1016/j.jtbi.2006.10.027
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Living organisms are robust to a great variety of genetic changes. Gene regulation networks and metabolic pathways self-organize and reaccommodate to make the organism perform with stability and reliability under many point mutations, gene duplications and gene deletions. At the same time, living organisms are evolvable, which means that these kind of genetic perturbations can eventually make the organism acquire new functions and adapt to new environments. It is still an open problem to determine how robustness and evolvability blend together at the genetic level to produce stable organisms that yet can change and evolve. Here we address this problem by studying the robustness and evolvability of the attractor landscape of genetic regulatory network models under the process of gene duplication followed by divergence. We show that an intrinsic property of this kind of networks is that, after the divergence of the parent and duplicate genes, with a high probability the previous phenotypes, encoded in the attractor landscape of the network, are preserved and new ones might appear. The above is true in a variety of network topologies and even for the case of extreme divergence in which the duplicate gene bears almost no relation with its parent. Our results indicate that networks operating close to the so-called "critical regime" exhibit the maximum robustness and evolvability simultaneously. (c) 2006 Elsevier Ltd. All rights reserved.
引用
收藏
页码:433 / 448
页数:16
相关论文
共 53 条
[51]  
Wuensche A., 1992, The global dynamics of cellular automata
[52]   Predictions of gene family distributions in microbial genomes: Evolution by gene duplication and modification [J].
Yanai, I ;
Camacho, CJ ;
Delisi, C .
PHYSICAL REVIEW LETTERS, 2000, 85 (12) :2641-2644
[53]   Evolution by gene duplication: an update [J].
Zhang, JZ .
TRENDS IN ECOLOGY & EVOLUTION, 2003, 18 (06) :292-298