The Eukaryotic Promoter Database EPD

被引:111
作者
Perier, RC [1 ]
Junier, T [1 ]
Bucher, P [1 ]
机构
[1] Swiss Inst Expt Canc Res, CH-1066 Epalinges, Switzerland
关键词
D O I
10.1093/nar/26.1.353
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of experimentally characterised eukaryotic POL II promoters, The underlying definition of a promoter is that of a transcription initiation site, All information presented in EPD results from an independent evaluation of primary experimental data shown in the biological literature, Sequences flanking transcription initiation sites are indirectly given by pointers to EMBL sequences, The annotation part of a promoter entry includes description of the promoter-defining evidence, cross-references to other databases, and bibliographic references. Being designed as a resource for comparative sequence analysis, EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets. The database is available through the World Wide Web at URL http://cmpteam4.unil.ch.
引用
收藏
页码:353 / 357
页数:5
相关论文
共 16 条
  • [1] The SWISS-PROT protein sequence data bank and its supplement TrEMBL
    Bairoch, A
    Apweller, R
    [J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (01) : 31 - 36
  • [2] The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998
    Bairoch, A
    Apweiler, R
    [J]. NUCLEIC ACIDS RESEARCH, 1998, 26 (01) : 38 - 42
  • [3] GenBank
    Benson, DA
    Boguski, MS
    Lipman, DJ
    Ostell, J
    Ouellette, BFF
    [J]. NUCLEIC ACIDS RESEARCH, 1998, 26 (01) : 1 - 7
  • [4] GENBANK
    BENSON, DA
    BOGUSKI, M
    LIPMAN, DJ
    OSTELL, J
    [J]. NUCLEIC ACIDS RESEARCH, 1994, 22 (17) : 3441 - 3444
  • [5] BREATHNACH R, 1981, ANNU REV BIOCHEM, V50, P349, DOI 10.1146/annurev.bi.50.070181.002025
  • [6] COMPILATION AND ANALYSIS OF EUKARYOTIC POL-II PROMOTER SEQUENCES
    BUCHER, P
    TRIFONOV, EN
    [J]. NUCLEIC ACIDS RESEARCH, 1986, 14 (24) : 10009 - 10026
  • [7] SIGNAL SEARCH ANALYSIS - A NEW METHOD TO LOCALIZE AND CHARACTERIZE FUNCTIONALLY IMPORTANT DNA-SEQUENCES
    BUCHER, P
    BRYAN, B
    [J]. NUCLEIC ACIDS RESEARCH, 1984, 12 (01) : 287 - 305
  • [8] Eukaryotic promoter recognition
    Fickett, JW
    Hatzigeorgiou, AC
    [J]. GENOME RESEARCH, 1997, 7 (09) : 861 - 878
  • [9] MOLECULAR BIOLOGICAL DATABASES - THE CHALLENGE OF THE GENOME ERA
    FUCHS, R
    CAMERON, GN
    [J]. PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 1991, 56 (03) : 215 - 245
  • [10] FlyBase: A Drosophila database
    Gelbart, WM
    Crosby, M
    Matthews, B
    Rindone, WP
    Chillemi, J
    Twombly, SR
    Emmert, D
    Ashburner, M
    Drysdale, RA
    Whitfield, E
    Millburn, GH
    deGrey, A
    Kaufman, T
    Matthews, K
    Gilbert, D
    Strelets, V
    [J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (01) : 63 - 66