Corynebacterium pacaense sp. nov., Alistipes megaguti sp. nov., Alistipes provencensis sp. nov., 3 new bacteria isolated from fresh human stool specimens

被引：4

作者：

Bellai, S. ^{[1
,2
]}

Naud, S. ^{[1
,2
]}

Ndongo, S. ^{[1
,2
]}

Lo, C., I ^{[2
,3
]}

Anani, H. ^{[2
,3
]}

Raoult, D. ^{[1
,2
]}

Lagier, J-C ^{[1
,2
]}

机构：

[1] Aix Marseille Univ, MEPHI, IRD, Marseille, France

[2] IHU Mediterranee Infect, 19-21 Blvd Jean Moulin, F-13385 Marseille 05, France

[3] Aix Marseille Univ, AP HM, SSA, IRD,VITROME, Marseille, France

来源：

NEW MICROBES AND NEW INFECTIONS | 2019年 / 32卷

关键词：

Alistipes megaguti; Alistipes provencensis; Corynebacterium pacaense; culturomics; taxonogenomics; CULTUROMICS; ALGORITHM;

D O I：

10.1016/j.nmni.2019.100593

中图分类号：

R51 [传染病];

学科分类号：

100201 [内科学];

摘要：

Here we describe the basic characteristics of Corynebacterium pacaense strain Marseille-P2417(T) (= CSUR P2417), Alistipes megaguti strain Marseille-P5997(T) (= CSUR P5997) and Alistipes provencensis strain Marseille-P2431(T) (= CSUR P2431 = DSM 102308). The phenotypic criteria, the 16S ribosomal RNA sequencing and MALDI-TOF MS spectra analysis were used to identify and characterize these new bacteria species, which were isolated from fresh human stool specimens. (C) 2019 The Authors. Published by Elsevier Ltd.

引用

页数：9

共 15 条

[1]

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].

Bankevich, Anton ;

Nurk, Sergey ;

Antipov, Dmitry ;

Gurevich, Alexey A. ;

Dvorkin, Mikhail ;

Kulikov, Alexander S. ;

Lesin, Valery M. ;

Nikolenko, Sergey I. ;

Son Pham ;

Prjibelski, Andrey D. ;

Pyshkin, Alexey V. ;

Sirotkin, Alexander V. ;

Vyahhi, Nikolay ;

Tesler, Glenn ;

Alekseyev, Max A. ;

Pevzner, Pavel A. .

JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477

[2]

Trimmomatic: a flexible trimmer for Illumina sequence data [J].

Bolger, Anthony M. ;

Lohse, Marc ;

Usadel, Bjoern .

BIOINFORMATICS, 2014, 30 (15) :2114-2120

[3]

Diop Awa, 2016, Microbial Ecology in Health and Disease, V27, P32049, DOI 10.3402/mehd.v27.32049

[4]

From culturomics to taxonomogenomics: A need to change the taxonomy of prokaryotes in clinical microbiology [J].

Fournier, Pierre-Edouard ;

Lagier, Jean-Christophe ;

Dubourg, Gregory ;

Raoult, Didier .

ANAEROBE, 2015, 36 :73-78

[5]

Microbial culturomics: paradigm shift in the human gut microbiome study [J].

Lagier, J. -C. ;

Armougom, F. ;

Million, M. ;

Hugon, P. ;

Pagnier, I. ;

Robert, C. ;

Bittar, F. ;

Fournous, G. ;

Gimenez, G. ;

Maraninchi, M. ;

Trape, J. -F. ;

Koonin, E. V. ;

La Scola, B. ;

Raoult, D. .

CLINICAL MICROBIOLOGY AND INFECTION, 2012, 18 (12) :1185-1193

[6]

Lagier JC, 2016, NAT MICROBIOL, V1, DOI [10.1038/NMICROBIOL.2016.203, 10.1038/nmicrobiol.2016.203]

[7]

The Rebirth of Culture in Microbiology through the Example of Culturomics To Study Human Gut Microbiota [J].

Lagier, Jean-Christophe ;

Hugon, Perrine ;

Khelaifia, Saber ;

Fournier, Pierre-Edouard ;

La Scola, Bernard ;

Raoult, Didier .

CLINICAL MICROBIOLOGY REVIEWS, 2015, 28 (01) :237-264

[8]

Current and Past Strategies for Bacterial Culture in Clinical Microbiology [J].

Lagier, Jean-Christophe ;

Edouard, Sophie ;

Pagnier, Isabelle ;

Mediannikov, Oleg ;

Drancourt, Michel ;

Raoult, Didier .

CLINICAL MICROBIOLOGY REVIEWS, 2015, 28 (01) :208-236

[9]

OrthoANI: An improved algorithm and software for calculating average nucleotide identity [J].

Lee, Imchang ;

Kim, Yeong Ouk ;

Park, Sang-Cheol ;

Chun, Jongsik .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2016, 66 :1100-1103

[10]

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler [J].

Luo, Ruibang ;

Liu, Binghang ;

Xie, Yinlong ;

Li, Zhenyu ;

Huang, Weihua ;

Yuan, Jianying ;

He, Guangzhu ;

Chen, Yanxiang ;

Pan, Qi ;

Liu, Yunjie ;

Tang, Jingbo ;

Wu, Gengxiong ;

Zhang, Hao ;

Shi, Yujian ;

Liu, Yong ;

Yu, Chang ;

Wang, Bo ;

Lu, Yao ;

Han, Changlei ;

Cheung, David W. ;

Yiu, Siu-Ming ;

Peng, Shaoliang ;

Zhu Xiaoqian ;

Liu, Guangming ;

Liao, Xiangke ;

Li, Yingrui ;

Yang, Huanming ;

Wang, Jian ;

Lam, Tak-Wah ;

Wang, Jun .

GIGASCIENCE, 2012, 1

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