Game-theoretical approaches to studying the evolution of biochemical systems

被引:73
作者
Pfeiffer, T
Schuster, S
机构
[1] Univ Jena, Dept Bioinformat, D-07743 Jena, Germany
[2] ETH, Computat Lab, CH-8092 Zurich, Switzerland
关键词
D O I
10.1016/j.tibs.2004.11.006
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Evolutionary optimization has been successfully used to increase our understanding of key properties of biochemical systems. Traditional optimization is, however, often insufficient for gaining deeper insights into the evolution of such systems because usually there is a mutual relationship between the properties optimized by evolution and the properties of the environment. Thus, by evolving towards optimal properties, organisms change their environment, which in turn alters the optimum. Evolutionary game theory provides an appropriate framework for analyzing evolution in such 'dynamic fitness landscapes'. We therefore argue that it is a promising approach to studying the evolution of biochemical systems. Indeed, recent studies have applied evolutionary game theory to key issues in the evolution of energy metabolism.
引用
收藏
页码:20 / 25
页数:6
相关论文
共 51 条
[1]   THE EVOLUTION OF COOPERATION [J].
AXELROD, R ;
HAMILTON, WD .
SCIENCE, 1981, 211 (4489) :1390-1396
[2]  
BAUCHOP T, 1960, J GEN MICROBIOL, V23, P457
[3]   STRUCTURED HABITATS AND THE EVOLUTION OF ANTICOMPETITOR TOXINS IN BACTERIA [J].
CHAO, L ;
LEVIN, BR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1981, 78 (10) :6324-6328
[4]   Synergistic degradation of linuron by a bacterial consortium and isolation of a single linuron-degrading Variovorax strain [J].
Dejonghe, W ;
Berteloot, E ;
Goris, J ;
Boon, N ;
Crul, K ;
Maertens, S ;
Höfte, M ;
De Vos, P ;
Verstraete, W ;
Top, EM .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2003, 69 (03) :1532-1541
[5]   On the origin of species by sympatric speciation [J].
Dieckmann, U ;
Doebeli, M .
NATURE, 1999, 400 (6742) :354-357
[6]   A model for the evolutionary dynamics of cross-feeding polymorphisms in microorganisms [J].
Doebeli, M .
POPULATION ECOLOGY, 2002, 44 (02) :59-70
[7]   ENZYME-ACTIVITY AND FITNESS - EVOLUTION IN SOLUTION [J].
DYKHUIZEN, DE ;
DEAN, AM .
TRENDS IN ECOLOGY & EVOLUTION, 1990, 5 (08) :257-262
[8]   Characterizing the metabolic phenotype: A phenotype phase plane analysis [J].
Edwards, JS ;
Ramakrishna, R ;
Palsson, BO .
BIOTECHNOLOGY AND BIOENGINEERING, 2002, 77 (01) :27-36
[9]  
Fiechter A, 1989, Adv Biochem Eng Biotechnol, V39, P1
[10]   Models of parasite virulence [J].
Frank, SA .
QUARTERLY REVIEW OF BIOLOGY, 1996, 71 (01) :37-78