Changes in Transmembrane Helix Alignment by Arginine Residues Revealed by Solid-State NMR Experiments and Coarse-Grained MD Simulations

被引:69
作者
Vostrikov, Vitaly V. [1 ]
Hall, Benjamin A. [2 ,3 ]
Greathouse, Denise V. [1 ]
Koeppe, Roger E., II [1 ]
Sansom, Mark S. P. [2 ,3 ]
机构
[1] Univ Arkansas, Dept Chem & Biochem, Fayetteville, AR 72701 USA
[2] Univ Oxford, Dept Biochem, Oxford OX1 3QU, England
[3] Univ Oxford, Oxford Ctr Integrat Syst Biol, Oxford OX1 3QU, England
基金
美国国家科学基金会; 英国生物技术与生命科学研究理事会;
关键词
MOLECULAR-DYNAMICS SIMULATIONS; PROTEIN-LIPID INTERACTIONS; POTASSIUM-CHANNEL; MEMBRANE-PROTEINS; COMPUTER-SIMULATION; FORCE-FIELD; SIDE-CHAIN; PEPTIDES; VOLTAGE; BILAYER;
D O I
10.1021/ja100598e
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Independent experimental and computational approaches show agreement concerning arginine/membrane interactions when a single arginine is introduced at selected positions within the membrane-spanning region of acetyl-GGALW(5)LALALAL(12)AL(14)ALALW(19)LAGA-ethanolamide, designated GWALP23. Peptide sequence isomers having Arg in position 12 or position 14 display markedly different behaviors, as deduced by both solid-state NMR experiments and coarse-grained molecular dynamics (CG-MD) simulations. With respect to the membrane normal of DOPC or DPPC lipid bilayer membranes, GWALP23-R14 shows one major state whose apparent average tilt is 10 greater than that of GWALP23. The presence of R14 furthermore induces bilayer thinning and peptide displacement to "lift" the charged guanidinium toward the bilayer surface. By contrast, GWALP23-R12 exhibits multiple states that are in slow exchange on the NMR time scale, with CG-MD simulations indicating two distinct positions with different screw rotation angles in the membrane, along with an increased tendency to exit the lipid bilayer.
引用
收藏
页码:5803 / 5811
页数:9
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