Computing the electrostatic free-energy of complex molecules:: The variational Coulomb field approximation

被引:21
作者
Borgis, D
Lévy, N
Marchi, M
机构
[1] Univ Evry Val Dessonne, F-91405 Evry, France
[2] CEA, DSV, DBJC, SBFM, F-91191 Gif Sur Yvette, France
关键词
D O I
10.1063/1.1589745
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We introduce a novel approximate electrostatic method yielding the electrostatic fields around a molecule of complex shape embedded in a continuum dielectric solvent and the electrostatic solvation free-energies. This method extends the widely used Coulomb field approximation by supposing that the dielectric displacement can be written as the Coulomb field created by a set of fictitious "image" charges placed on the solute atomic sites. The electrostatic problem is solved by minimizing a polarization density functional with respect to the image charges. The method presents computational advantages which are reminiscent to those of the Coulomb field approximation; in particular, the solvation free-energy can be cast into a form which requires only the evaluation of space integrals limited to the interior of the solute. Its accuracy is demonstrated for simple solutes in water, ion pairs, the Tanford-Kirkwood globular protein model, and small polypeptides. It is shown also that our approach provides a systematic correction beyond the Coulomb field approximation which is able to improve the estimation of the atomic self-energies and associated Born radii in the generalized Born method. (C) 2003 American Institute of Physics.
引用
收藏
页码:3516 / 3528
页数:13
相关论文
共 53 条
[1]   Electrostatic potential inside ionic solutions confined by dielectrics: a variational approach [J].
Allen, R ;
Hansen, JP ;
Melchionna, S .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2001, 3 (19) :4177-4186
[2]  
[Anonymous], 1996, MOL MODELLING PRINCI
[3]   Parametrizing a polarizable force field from ab initio data.: I.: The fluctuating point charge model [J].
Banks, JL ;
Kaminski, GA ;
Zhou, RH ;
Mainz, DT ;
Berne, BJ ;
Friesner, RA .
JOURNAL OF CHEMICAL PHYSICS, 1999, 110 (02) :741-754
[4]   Generalized born models of macromolecular solvation effects [J].
Bashford, D ;
Case, DA .
ANNUAL REVIEW OF PHYSICAL CHEMISTRY, 2000, 51 :129-152
[5]   DYNAMIC THEORY OF PROTON TUNNELING TRANSFER RATES IN SOLUTION - GENERAL FORMULATION [J].
BORGIS, D ;
HYNES, JT .
CHEMICAL PHYSICS, 1993, 170 (03) :315-346
[6]   CHARMM - A PROGRAM FOR MACROMOLECULAR ENERGY, MINIMIZATION, AND DYNAMICS CALCULATIONS [J].
BROOKS, BR ;
BRUCCOLERI, RE ;
OLAFSON, BD ;
STATES, DJ ;
SWAMINATHAN, S ;
KARPLUS, M .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1983, 4 (02) :187-217
[7]   CLASSICAL SOLVENT DYNAMICS AND ELECTRON-TRANSFER .1. CONTINUUM THEORY [J].
CALEF, DF ;
WOLYNES, PG .
JOURNAL OF PHYSICAL CHEMISTRY, 1983, 87 (18) :3387-3400
[8]   A transferable polarizable electrostatic force field for molecular mechanics based on the chemical potential equalization principle [J].
Chelli, R ;
Procacci, P .
JOURNAL OF CHEMICAL PHYSICS, 2002, 117 (20) :9175-9189
[9]  
COALSON R, 1998, ENCY COMPUTATIONAL C, V3
[10]   SOLVING THE FINITE-DIFFERENCE LINEARIZED POISSON-BOLTZMANN EQUATION - A COMPARISON OF RELAXATION AND CONJUGATE-GRADIENT METHODS [J].
DAVIS, ME ;
MCCAMMON, JA .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1989, 10 (03) :386-391