G-language Genome Analysis Environment: a workbench for nucleotide sequence data mining

被引：66

作者：

Arakawa, K ^{[1
]}

Mori, K ^{[1
]}

Ikeda, K ^{[1
]}

Matsuzaki, T ^{[1
]}

Kobayashi, Y ^{[1
]}

Tomita, M ^{[1
]}

机构：

[1] Keio Univ, Inst Adv Biosci, Fujisawa, Kanagawa 2528520, Japan

来源：

BIOINFORMATICS | 2003年 / 19卷 / 02期

基金：

日本科学技术振兴机构;

关键词：

D O I：

10.1093/bioinformatics/19.2.305

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

G-language Genome Analysis Environment (G-language GAE) is an open source generic software package aimed for higher efficiency in bioinformatics analysis. G-language GAE has an interface as a set of Perl libraries for software development, and a graphical user interface for easy manipulation. Both Windows and Linux versions are available.

引用

页码：305 / 306

页数：2

共 8 条

[1] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, SF
Madden, TL
Schaffer, AA
Zhang, JH
Zhang, Z
Miller, W
Lipman, DJ
[J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (17) : 3389 - 3402
[2] GenBank
Benson, DA
Karsch-Mizrachi, I
Lipman, DJ
Ostell, J
Rapp, BA
Wheeler, DL
[J]. NUCLEIC ACIDS RESEARCH, 2002, 30 (01) : 17 - 20
[3] The complete genome sequence of Escherichia coli K-12
Blattner, FR
Plunkett, G
Bloch, CA
Perna, NT
Burland, V
Riley, M
ColladoVides, J
Glasner, JD
Rode, CK
Mayhew, GF
Gregor, J
Davis, NW
Kirkpatrick, HA
Goeden, MA
Rose, DJ
Mau, B
Shao, Y
[J]. SCIENCE, 1997, 277 (5331) : 1453 - +
[4] Asymmetric substitution patterns in the two DNA strands of bacteria
Lobry, JR
[J]. MOLECULAR BIOLOGY AND EVOLUTION, 1996, 13 (05) : 660 - 665
[5] Creating a bioinformatics nation - A web-services model will allow biological data to be fully exploited.
Stein, L
[J]. NATURE, 2002, 417 (6885) : 119 - 120
[6] Stein L D, 2001, Methods Biochem Anal, V43, P413
[7] CLUSTAL-W - IMPROVING THE SENSITIVITY OF PROGRESSIVE MULTIPLE SEQUENCE ALIGNMENT THROUGH SEQUENCE WEIGHTING, POSITION-SPECIFIC GAP PENALTIES AND WEIGHT MATRIX CHOICE
THOMPSON, JD
HIGGINS, DG
GIBSON, TJ
[J]. NUCLEIC ACIDS RESEARCH, 1994, 22 (22) : 4673 - 4680
[8] E-CELL: software environment for whole-cell simulation
Tomita, M
Hashimoto, K
Takahashi, K
Shimizu, TS
Matsuzaki, Y
Miyoshi, F
Saito, K
Tanida, S
Yugi, K
Venter, JC
Hutchison, CA
[J]. BIOINFORMATICS, 1999, 15 (01) : 72 - 84

← 1 →