Assessing diversity and biogeography of aerobic anoxygenic phototrophic bacteria in surface waters of the Atlantic and Pacific Oceans using the Global Ocean Sampling expedition metagenomes

被引:139
作者
Yutin, Natalya
Suzuki, Marcelino T. [1 ]
Teeling, Hanno
Weber, Marc
Venter, J. Craig
Rusch, Douglas B.
Beja, Oded
机构
[1] Technion Israel Inst Technol, Dept Biol, IL-32000 Haifa, Israel
[2] Univ Maryland, Chesapeake Biol Lab, Ctr Environm Sci, Solomons, MD 20688 USA
[3] Max Planck Inst Marine Microbiol, Dept Mol Ecol, Microbial Genom Grp, Bremen, Germany
[4] J Craig Venter Inst, Rockville, MD 20850 USA
关键词
D O I
10.1111/j.1462-2920.2007.01265.x
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Aerobic anoxygenic photosynthetic bacteria (AAnP) were recently proposed to be significant contributors to global oceanic carbon and energy cycles. However, AAnP abundance, spatial distribution, diversity and potential ecological importance remain poorly understood. Here we present metagenomic data from the Global Ocean Sampling expedition indicating that AAnP diversity and abundance vary in different oceanic regions. Furthermore, we show for the first time that the composition of AAnP assemblages change between different oceanic regions, with specific bacterial assemblages adapted to open ocean or coastal areas respectively. Our results support the notion that marine AAnP populations are complex and dynamic, and compose an important fraction of bacterioplankton assemblages in certain oceanic areas.
引用
收藏
页码:1464 / 1475
页数:12
相关论文
共 42 条
[1]   Photosynthetic and phylogenetic primers for detection of anoxygenic phototrophs in natural environments [J].
Achenbach, LA ;
Carey, J ;
Madigan, MT .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2001, 67 (07) :2922-2926
[2]   Aerobic anoxygenic photosynthesis in Roseobacter clade bacteria from diverse marine habitats [J].
Allgaier, M ;
Uphoff, H ;
Felske, A ;
Wagner-Döbler, I .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2003, 69 (09) :5051-5059
[3]   The marine viromes of four oceanic regions [J].
Angly, Florent E. ;
Felts, Ben ;
Breitbart, Mya ;
Salamon, Peter ;
Edwards, Robert A. ;
Carlson, Craig ;
Chan, Amy M. ;
Haynes, Matthew ;
Kelley, Scott ;
Liu, Hong ;
Mahaffy, Joseph M. ;
Mueller, Jennifer E. ;
Nulton, Jim ;
Olson, Robert ;
Parsons, Rachel ;
Rayhawk, Steve ;
Suttle, Curtis A. ;
Rohwer, Forest .
PLOS BIOLOGY, 2006, 4 (11) :2121-2131
[4]   Unsuspected diversity among marine aerobic anoxygenic phototrophs [J].
Béjà, O ;
Suzuki, MT ;
Heidelberg, JF ;
Nelson, WC ;
Preston, CM ;
Hamada, T ;
Eisen, JA ;
Fraser, CM ;
DeLong, EF .
NATURE, 2002, 415 (6872) :630-633
[5]   Overview of the marine Roseobacter lineage [J].
Buchan, A ;
González, JM ;
Moran, MA .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2005, 71 (10) :5665-5677
[6]   Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studies [J].
Case, Rebecca J. ;
Boucher, Yan ;
Dahllof, Ingela ;
Holmstrom, Carola ;
Doolittle, W. Ford ;
Kjelleberg, Staffan .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2007, 73 (01) :278-288
[7]   Aerobic anoxygenic phototrophic bacteria in the Mid-Atlantic Bight and the North Pacific Gyre [J].
Cottrell, MT ;
Mannino, A ;
Kirchman, DL .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (01) :557-564
[8]   Real-time PCR for quantification of aerobic anoxygenic phototrophic bacteria based on pufM gene in marine environment [J].
Du, HL ;
Jiao, NZ ;
Hu, YH ;
Zeng, YH .
JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY, 2006, 329 (01) :113-121
[9]   Isolation of novel pelagic bacteria from the German bight and their seasonal contributions to surface picoplankton [J].
Eilers, H ;
Pernthaler, J ;
Peplies, J ;
Glöckner, FO ;
Gerdts, G ;
Amann, R .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2001, 67 (11) :5134-5142
[10]   Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria [J].
Glöckner, FO ;
Zaichikov, E ;
Belkova, N ;
Denissova, L ;
Pernthaler, J ;
Pernthaler, A ;
Amann, R .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2000, 66 (11) :5053-+