Biogeographical patterns of soil bacterial communities

被引:69
作者
Dequiedt, Samuel [1 ,2 ,3 ]
Thioulouse, Jean [4 ,5 ]
Jolivet, Claudy [6 ]
Saby, Nicolas P. A. [6 ]
Lelievre, Melanie [1 ,2 ,3 ]
Maron, Pierre-Alain [1 ,2 ,3 ]
Martin, Manuel P. [6 ]
Prevost-Boure, Nicolas Chemidlin [1 ,2 ]
Toutain, Benoit [6 ]
Arrouays, Dominique [6 ]
Lemanceau, Philippe [1 ,2 ,3 ]
Ranjard, Lionel [1 ,2 ,3 ]
机构
[1] Univ Bourgogne, INRA, UMR Microbiol Sol & Environm, CMSE, F-21065 Dijon, France
[2] Univ Bourgogne, UMR 1229, CMSE, F-21065 Dijon, France
[3] Univ Bourgogne, INRA, CMSE, F-21065 Dijon, France
[4] Univ Lyon, F-69000 Lyon, France
[5] Univ Lyon 1, CNRS, UMR5558, Lab Biometrie & Biol Evolut, F-69622 Villeurbanne, France
[6] INRA Orleans, US 1106, Unite INFOSOL, F-45166 Olivet, France
来源
ENVIRONMENTAL MICROBIOLOGY REPORTS | 2009年 / 1卷 / 04期
关键词
FUNGAL; SIZE;
D O I
10.1111/j.1758-2229.2009.00040.x
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
This study provides the first maps of variations in bacterial community structure on a broad scale based on genotyping of DNA extracts from 593 soils from four different regions of France (North, Brittany, South-East and Landes). Soils were obtained from the soil library of RMQS ('Reseau de Mesures de la Qualite des Sols' = French soil quality monitoring network). The relevance of a biogeographic approach for studying bacterial communities was demonstrated by the great variability in community structure and specific geographical patterns within and between the four regions. The data indicated that the distribution of bacterial community composition might be more related to local factors such as soil type and land cover than to more global factors such as climatic and geomorphologic characteristics. Furthermore, the regional pools of biodiversity could be ordered: South-East >= North > Brittany > Landes, according to the observed regional variability of the bacterial communities, which could be helpful for improving land use in accordance with soil biodiversity management.
引用
收藏
页码:251 / 255
页数:5
相关论文
共 22 条
[1]  
Arrouays Dominique, 2002, Comptes Rendus de l'Academie d'Agriculture de France, V88, P93
[2]  
Bass-Becking L.G. M., 1934, Geobiologie of inleiding tot de milieu- kunde
[3]  
BEIJERINCK MW, 1913, JB KNONIKLIJKE AKADE
[4]  
BIVAND R., 2008, Spdep: Spatial dependence: weighting schemes, statistics and models
[5]  
Chessel D., 2004, R. N., V4, P5, DOI DOI 10.2307/3780087
[6]   Spatial ordination of vegetation data using a generalization of Wartenberg's multivariate spatial correlation [J].
Dray, Stephane ;
Said, Sonia ;
Debias, Francois .
JOURNAL OF VEGETATION SCIENCE, 2008, 19 (01) :45-56
[7]   The ade4 package: Implementing the duality diagram for ecologists [J].
Dray, Stephane ;
Dufour, Anne-Beatrice .
JOURNAL OF STATISTICAL SOFTWARE, 2007, 22 (04) :1-20
[8]   The diversity and biogeography of soil bacterial communities [J].
Fierer, N ;
Jackson, RB .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (03) :626-631
[9]   Spatial scaling of microbial biodiversity [J].
Green, Jessica ;
Bohannan, Brendan J. M. .
TRENDS IN ECOLOGY & EVOLUTION, 2006, 21 (09) :501-507
[10]   Spatial scaling of microbial eukaryote diversity [J].
Green, JL ;
Holmes, AJ ;
Westoby, M ;
Oliver, I ;
Briscoe, D ;
Dangerfield, M ;
Gillings, M ;
Beattie, AJ .
NATURE, 2004, 432 (7018) :747-750