Polarizable empirical force field for aromatic compounds based on the classical drude oscillator

被引:136
作者
Lopes, Pedro E. M.
Lamoureux, Guillaume
Roux, Benoit
MacKerell, Alexander D., Jr. [1 ]
机构
[1] Univ Maryland, Sch Pharm, Dept Pharmaceut Sci, Baltimore, MD 21201 USA
[2] Univ Chicago, Inst Mol Pediat Sci, Chicago, IL 60637 USA
[3] Univ Penn, Dept Chem, Ctr Mol Modeling, Philadelphia, PA 19104 USA
关键词
D O I
10.1021/jp0663614
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The polarizable empirical CHARMM force field based on the classical Drude oscillator has been extended to the aromatic compounds benzene and toluene. Parameters were optimized for benzene and then transferred directly to toluene, with parameters for the methyl moiety of toluene taken from the previously published work on the alkanes. Optimization of all parameters was performed against an extensive set of quantum mechanical and experimental data. Ab initio data was used for determination of the electrostatic parameters, for the vibrational analysis, and in the optimization of the relative magnitudes of the Lennard-Jones parameters. The absolute values of the Lennard-Jones parameters were determined by comparing computed and experimental heats of vaporization, molecular volumes, free energies of hydration, and dielectric constants. The newly developed parameter set was extensively tested against additional experimental data such as diffusion constants, heat capacities at constant pressure, and isothermal compressibilities including data as a function of temperature. Moreover, the structures of liquid benzene, liquid toluene, and solutions of each in water were studied. In the case of benzene, the computed and experimental total distribution function were compared, with the developed model shown to be in excellent agreement with experiment.
引用
收藏
页码:2873 / 2885
页数:13
相关论文
共 126 条
[1]   The Cambridge Structural Database: a quarter of a million crystal structures and rising [J].
Allen, FH .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 2002, 58 (3 PART 1) :380-388
[2]  
ALLEN MP, 1994, COMPUTER SIMULATION
[3]   Determination of electrostatic parameters for a polarizable force field based on the classical Drude oscillator [J].
Anisimov, VM ;
Lamoureux, G ;
Vorobyov, IV ;
Huang, N ;
Roux, B ;
MacKerell, AD .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2005, 1 (01) :153-168
[4]  
Anisimov VM, 2004, BIOPHYS J, V86, p415A
[5]  
BACKX, 1998, J PHYS CHEM, V85, P2975
[6]   NEW ALGORITHM FOR CONSTRAINED MOLECULAR-DYNAMICS SIMULATION OF LIQUID BENZENE AND NAPHTHALENE [J].
BARANYAI, A ;
EVANS, DJ .
MOLECULAR PHYSICS, 1990, 70 (01) :53-63
[7]   MONTE-CARLO STUDY OF SMALL BENZENE CLUSTERS .2. TRANSITION FROM RIGID TO FLUXIONAL FORMS [J].
BARTELL, LS ;
DULLES, FJ .
JOURNAL OF PHYSICAL CHEMISTRY, 1995, 99 (47) :17107-17112
[8]   A NEUTRON AND X-RAY-DIFFRACTION STUDY OF THE BINARY-LIQUID AROMATIC SYSTEM BENZENE-HEXAFLUOROBENZENE .1. THE PURE COMPONENTS [J].
BARTSCH, E ;
BERTAGNOLLI, H ;
SCHULZ, G ;
CHIEUX, P .
BERICHTE DER BUNSEN-GESELLSCHAFT-PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 1985, 89 (02) :147-156
[9]  
Battaglia M. R., 1981, Chemical Physics Letters, V78, P421, DOI 10.1016/0009-2614(81)85228-1
[10]   DEPOLARIZED RAYLEIGH-SCATTERING AND C-13 NMR-STUDIES OF ANISOTROPIC MOLECULAR-REORIENTATION OF AROMATIC-COMPOUNDS IN SOLUTION [J].
BAUER, DR ;
ALMS, GR ;
BRAUMAN, JI ;
PECORA, R .
JOURNAL OF CHEMICAL PHYSICS, 1974, 61 (06) :2255-2261