Crystal structure of a cohesin module from Clostridium cellulolyticum:: Implications for dockerin recognition

被引:50
作者
Spinelli, S
Fiérobe, HP
Belaïch, A
Belaïch, JP
Henrissat, B
Cambillau, C
机构
[1] Univ Aix Marseille 1, CNRS, UMR 6098, F-13402 Marseille 20, France
[2] Univ Aix Marseille 2, F-13402 Marseille 20, France
[3] CNRS, IFR1, UPR 9036, F-13402 Marseille 20, France
[4] Univ Aix Marseille 1, F-13331 Marseille, France
关键词
cohesin; crystal structure; Clostridium cellulolyticum; cellulosome; dockerin;
D O I
10.1006/jmbi.2000.4191
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In the assembly of the Clostridium cellulolyticum cellulosome, the multiple cohesin modules of the scaffolding protein CipC serve as receptors for cellulolytic enzymes which bear a dockerin module. The X-ray structure of a type I C. cellulolyticum cohesin module (Cc-cohesin) has been solved using molecular replacement, and refined at 2.0 Angstrom resolution. Despite a rather low sequence identity of 32%, this module has a fold close to those of the two Clostridium thermocellum cohesin (Ct-cohesin) modules whose 3D structures have been determined previously. Cc-cohesin forms a dimer in the crystal, as do the two Ct-cohesins. We show here that the dimer exists in solution and that addition of dockerin-containing proteins dissociates the dimer. This suggests that the dimerization interface and the cohesin/dockerin interface may overlap. The nature of the overall surface and of the dimer interface of Cc-cohesin differ notably from those of the Ct-cohesin modules, being much less polar, and this may explain the species specificity observed in the cohesin/dockerin interaction of C. cellulolyticum and C. thermocellum. We have produced a topology model of a C. cellulolyticum dockerin and of a Cc-cohesin/dockerin complex using homology modeling and available biochemical data. Our model suggests that a special residue pair, already identified in dockerin sequences, is located at the center of the cohesin surface putatively interacting with the dockerin. (C) 2000 Academic Press.
引用
收藏
页码:189 / 200
页数:12
相关论文
共 31 条
[1]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[2]   THE CELLULOSOME - A TREASURE-TROVE FOR BIOTECHNOLOGY [J].
BAYER, EA ;
MORAG, E ;
LAMED, R .
TRENDS IN BIOTECHNOLOGY, 1994, 12 (09) :379-386
[3]   Cellulosomes - Structure and ultrastructure [J].
Bayer, EA ;
Shimon, LJW ;
Shoham, Y ;
Lamed, R .
JOURNAL OF STRUCTURAL BIOLOGY, 1998, 124 (2-3) :221-234
[4]   The cellulosome: An exocellular, multiprotein complex specialized in cellulose degradation [J].
Beguin, P ;
Lemaire, M .
CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY, 1996, 31 (03) :201-236
[5]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[6]   CALCIUM-BINDING AFFINITY AND CALCIUM-ENHANCED ACTIVITY OF CLOSTRIDIUM-THERMOCELLUM ENDOGLUCANASE-D [J].
CHAUVAUX, S ;
BEGUIN, P ;
AUBERT, JP ;
BHAT, KM ;
GOW, LA ;
WOOD, TM ;
BAIROCH, A .
BIOCHEMICAL JOURNAL, 1990, 265 (01) :261-265
[7]   A novel cellulosomal scaffoldin from Acetivibrio cellulolyticus that contains a family 9 glycosyl hydrolase [J].
Ding, SY ;
Bayer, EA ;
Steiner, D ;
Shoham, Y ;
Lamed, R .
JOURNAL OF BACTERIOLOGY, 1999, 181 (21) :6720-6729
[8]   ACCURATE BOND AND ANGLE PARAMETERS FOR X-RAY PROTEIN-STRUCTURE REFINEMENT [J].
ENGH, RA ;
HUBER, R .
ACTA CRYSTALLOGRAPHICA SECTION A, 1991, 47 :392-400
[9]   Cellulosome from Clostridium cellulolyticum:: Molecular study of the dockerin/cohesin interaction [J].
Fierobe, HP ;
Pagès, S ;
Bélaïch, A ;
Champ, S ;
Lexa, D ;
Bélaïch, JP .
BIOCHEMISTRY, 1999, 38 (39) :12822-12832
[10]   Characterization of the cellulolytic complex (cellulosome) produced by Clostridium cellulolyticum [J].
Gal, L ;
Pages, S ;
Gaudin, C ;
Belaich, A ;
ReverbelLeroy, C ;
Tardif, C ;
Belaich, JP .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1997, 63 (03) :903-909