The Universal Protein Resource (UniProt) in 2010

被引：903

作者：

Apweiler, Rolf

Martin, Maria Jesus

O'Donovan, Claire

Magrane, Michele

Alam-Faruque, Yasmin

Antunes, Ricardo

Barrell, Daniel

Bely, Benoit

Bingley, Mark

Binns, David

Bower, Lawrence

Browne, Paul

Chan, Wei Mun

Dimmer, Emily

Eberhardt, Ruth

Fedotov, Alexander

Foulger, Rebecca

Garavelli, John

Huntley, Rachael

Jacobsen, Julius

Kleen, Michael

Laiho, Kati

Leinonen, Rasko

Legge, Duncan

Lin, Quan

Liu, Wudong

Luo, Jie

Orchard, Sandra

Patient, Samuel

Poggioli, Diego

Pruess, Manuela

Corbett, Matt

di Martino, Giuseppe

Donnelly, Mike

van Rensburg, Pieter

Bairoch, Amos ^{[1
]}

Bougueleret, Lydie ^{[1
]}

Xenarios, Ioannis ^{[1
]}

Altairac, Severine ^{[1
]}

Auchincloss, Andrea ^{[1
]}

Argoud-Puy, Ghislaine ^{[1
]}

Axelsen, Kristian ^{[1
]}

Baratin, Delphine ^{[1
]}

Blatter, Marie-Claude ^{[1
]}

Boeckmann, Brigitte ^{[1
]}

Bolleman, Jerven ^{[1
]}

Bollondi, Laurent ^{[1
]}

Boutet, Emmanuel ^{[1
]}

Quintaje, Silvia Braconi ^{[1
]}

Breuza, Lionel ^{[1
]}

机构：

[1] Univ Geneva, Biochem & Struct Biol Dept, CH-1211 Geneva 4, Switzerland

来源：

NUCLEIC ACIDS RESEARCH | 2010年 / 38卷

关键词：

ANNOTATION; SEQUENCE; ARCHIVE;

D O I：

10.1093/nar/gkp846

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

070307 [化学生物学]; 071010 [生物化学与分子生物学];

摘要：

The primary mission of UniProt is to support biological research by maintaining a stable, comprehensive, fully classified, richly and accurately annotated protein sequence knowledgebase, with extensive cross-references and querying interfaces freely accessible to the scientific community. UniProt is produced by the UniProt Consortium which consists of groups from the European Bioinformatics Institute (EBI), the Swiss Institute of Bioinformatics (SIB) and the Protein Information Resource (PIR). UniProt is comprised of four major components, each optimized for different uses: the UniProt Archive, the UniProt Knowledgebase, the UniProt Reference Clusters and the UniProt Metagenomic and Environmental Sequence Database. UniProt is updated and distributed every 3 weeks and can be accessed online for searches or download at http://www.uniprot.org.

引用

页码：D142 / D148

页数：7

共 18 条

[1]

[Anonymous], ENCY GENETICS GENOMI

[2]

Petabyte-scale innovations at the European Nucleotide Archive [J].

Cochrane, Guy ;

Akhtar, Ruth ;

Bonfield, James ;

Bower, Lawrence ;

Demiralp, Fehmi ;

Faruque, Nadeem ;

Gibson, Richard ;

Hoad, Gemma ;

Hubbard, Tim ;

Hunter, Christopher ;

Jang, Mikyung ;

Juhos, Szilveszter ;

Leinonen, Rasko ;

Leonard, Steven ;

Lin, Quan ;

Lopez, Rodrigo ;

Lorenc, Dariusz ;

McWilliam, Hamish ;

Mukherjee, Gaurab ;

Plaister, Sheila ;

Radhakrishnan, Rajesh ;

Robinson, Stephen ;

Sobhany, Siamak ;

Hoopen, Petra Ten ;

Vaughan, Robert ;

Zalunin, Vadim ;

Birney, Ewan .

NUCLEIC ACIDS RESEARCH, 2009, 37 :D19-D25

[3]

A novel method for automatic functional annotation of proteins [J].

Fleischmann, W ;

Möller, S ;

Gateau, A ;

Apweiler, R .

BIOINFORMATICS, 1999, 15 (03) :228-233

[4]

Ensembl 2008 [J].

Flicek, P. ;

Aken, B. L. ;

Beal, K. ;

Ballester, B. ;

Caccamo, M. ;

Chen, Y. ;

Clarke, L. ;

Coates, G. ;

Cunningham, F. ;

Cutts, T. ;

Down, T. ;

Dyer, S. C. ;

Eyre, T. ;

Fitzgerald, S. ;

Fernandez-Banet, J. ;

Graf, S. ;

Haider, S. ;

Hammond, M. ;

Holland, R. ;

Howe, K. L. ;

Howe, K. ;

Johnson, N. ;

Jenkinson, A. ;

Kahari, A. ;

Keefe, D. ;

Kokocinski, F. ;

Kulesha, E. ;

Lawson, D. ;

Longden, I. ;

Megy, K. ;

Meidl, P. ;

Overduin, B. ;

Parker, A. ;

Pritchard, B. ;

Prlic, A. ;

Rice, S. ;

Rios, D. ;

Schuster, M. ;

Sealy, I. ;

Slater, G. ;

Smedley, D. ;

Spudich, G. ;

Trevanion, S. ;

Vilella, A. J. ;

Vogel, J. ;

White, S. ;

Wood, M. ;

Birney, E. ;

Cox, T. ;

Curwen, V. .

NUCLEIC ACIDS RESEARCH, 2008, 36 :D707-D714

[5]

Automated annotation of microbial proteomes in SWISS-PROT [J].

Gattiker, A ;

Michoud, K ;

Rivoire, C ;

Auchincloss, AH ;

Coudert, E ;

Lima, T ;

Kersey, P ;

Pagni, M ;

Sigrist, CJA ;

Lachaize, C ;

Veuthey, AL ;

Gasteiger, E ;

Bairoch, A .

COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2003, 27 (01) :49-58

[6]

GAUDET P, 2009, DATABASE, DOI DOI 10.1093/DATABASE/BAP013

[7]

Gene Ontology annotations at SGD: new data sources and annotation methods [J].

Hong, Eurie L. ;

Balakrishnan, Rama ;

Dong, Qing ;

Christie, Karen R. ;

Park, Julie ;

Binkley, Gail ;

Costanzo, Maria C. ;

Dwight, Selina S. ;

Engel, Stacia R. ;

Fisk, Dianna G. ;

Hirschman, Jodi E. ;

Hitz, Benjamin C. ;

Krieger, Cynthia J. ;

Livstone, Michael S. ;

Miyasato, Stuart R. ;

Nash, Robert S. ;

Oughtred, Rose ;

Skrzypek, Marek S. ;

Weng, Shuai ;

Wong, Edith D. ;

Zhu, Kathy K. ;

Dolinski, Kara ;

Botstein, David ;

Cherry, J. Michael .

NUCLEIC ACIDS RESEARCH, 2008, 36 :D577-D581

[8]

Infrastructure for the life sciences: design and implementation of the UniProt website [J].

Jain, Eric ;

Bairoch, Amos ;

Duvaud, Severine ;

Phan, Isabelle ;

Redaschi, Nicole ;

Suzek, Baris E. ;

Martin, Maria J. ;

McGarvey, Peter ;

Gasteiger, Elisabeth .

BMC BIOINFORMATICS, 2009, 10

[9]

STRING 8-a global view on proteins and their functional interactions in 630 organisms [J].

Jensen, Lars J. ;

Kuhn, Michael ;

Stark, Manuel ;

Chaffron, Samuel ;

Creevey, Chris ;

Muller, Jean ;

Doerks, Tobias ;

Julien, Philippe ;

Roth, Alexander ;

Simonovic, Milan ;

Bork, Peer ;

von Mering, Christian .

NUCLEIC ACIDS RESEARCH, 2009, 37 :D412-D416

[10]

KEGG for linking genomes to life and the environment [J].

Kanehisa, Minoru ;

Araki, Michihiro ;

Goto, Susumu ;

Hattori, Masahiro ;

Hirakawa, Mika ;

Itoh, Masumi ;

Katayama, Toshiaki ;

Kawashima, Shuichi ;

Okuda, Shujiro ;

Tokimatsu, Toshiaki ;

Yamanishi, Yoshihiro .

NUCLEIC ACIDS RESEARCH, 2008, 36 :D480-D484

← 1 2 →