Crystal Structures of the Glycopeptide Sulfotransferase Teg12 in a Complex with the Teicoplanin Aglycone

被引:15
作者
Bick, Matthew J. [1 ]
Banik, Jacob J. [1 ]
Darst, Seth A. [1 ]
Brady, Sean F. [1 ]
机构
[1] Rockefeller Univ, Howard Hughes Med Inst, Lab Genetically Encoded Small Mol, Lab Mol Biophys, New York, NY 10065 USA
基金
美国国家卫生研究院;
关键词
STREPTOMYCES-TOYOCAENSIS; STAPHYLOCOCCUS-AUREUS; NMR SYSTEM; VANCOMYCIN; TELAVANCIN; RESISTANT; SOFTWARE; LIPOGLYCOPEPTIDE; CRYSTALLOGRAPHY; ANTIBIOTICS;
D O I
10.1021/bi100150v
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The TEG gene cluster, a glycopeptide biosynthetic gene cluster that is predicted to encode the biosynthesis of a polysulfated glycopeptide congener, was recently cloned from DNA extracted directly from desert soil. This predicted glycopeptide gene cluster contains three closely related sulfotransferases (Teg12, -13, and -14) that sulfate teicoplanin-like glycopeptides at three unique sites. Here we report a series of structures: an apo structure of Teg12, Teg12 bound to the desulfated cosubstrate 3'-phosphoadenosine 5'-phosphate, and Teg12 bound to the teicoplanin aglycone. Teg12 appears to undergo a series of significant conformational rearrangements during glycopeptide recruitment, binding, and catalysis. Loop regions that exhibit the most conformational flexibility show the least sequence conservation between TEG sulfotransferases. Site-directed mutagenesis guided by our structural studies confirmed the importance of key catalytic residues as well as the importance of residues found throughout the conformationally flexible loop regions.
引用
收藏
页码:4159 / 4168
页数:10
相关论文
共 29 条
[1]   PHENIX:: building new software for automated crystallographic structure determination [J].
Adams, PD ;
Grosse-Kunstleve, RW ;
Hung, LW ;
Ioerger, TR ;
McCoy, AJ ;
Moriarty, NW ;
Read, RJ ;
Sacchettini, JC ;
Sauter, NK ;
Terwilliger, TC .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2002, 58 :1948-1954
[2]   Structural and chemical profiling of the human cytosolic sulfotransferases [J].
Allali-Hassani, Abdellah ;
Pan, Patricia W. ;
Dombrovski, Ludmila ;
Najmanovich, Rafael ;
Tempel, Wolfram ;
Dong, Aiping ;
Loppnau, Peter ;
Martin, Fernando ;
Thonton, Janet ;
Edwards, Aled M. ;
Bochkarev, Alexey ;
Plotnikov, Alexander N. ;
Vedadi, Masoud ;
Arrowsmith, Cheryl H. .
PLOS BIOLOGY, 2007, 5 (05) :1063-1078
[3]   Cloning and characterization of new glycopeptide gene clusters found in an environmental DNA megalibrary [J].
Banik, Jacob J. ;
Brady, Sean F. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (45) :17273-17277
[4]   A47934, A NOVEL GLYCOPEPTIDE-AGLYCONE ANTIBIOTIC PRODUCED BY A STRAIN OF STREPTOMYCES-TOYOCAENSIS TAXONOMY AND FERMENTATION STUDIES [J].
BOECK, LD ;
MERTZ, FP .
JOURNAL OF ANTIBIOTICS, 1986, 39 (11) :1533-1540
[5]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[6]   Version 1.2 of the Crystallography and NMR system [J].
Brunger, Axel T. .
NATURE PROTOCOLS, 2007, 2 (11) :2728-2733
[7]   MolProbity: all-atom contacts and structure validation for proteins and nucleic acids [J].
Davis, Ian W. ;
Leaver-Fay, Andrew ;
Chen, Vincent B. ;
Block, Jeremy N. ;
Kapral, Gary J. ;
Wang, Xueyi ;
Murray, Laura W. ;
Arendall, W. Bryan, III ;
Snoeyink, Jack ;
Richardson, Jane S. ;
Richardson, David C. .
NUCLEIC ACIDS RESEARCH, 2007, 35 :W375-W383
[8]   Crystal structures of human sulfotransferases SULT1B1 and SULT1C1 complexed with the cofactor product adenosine-3′-5′-diphosphate (PAP) [J].
Dombrovski, Luidmila ;
Dong, Aiping ;
Bochkarev, Alexey ;
Plotnikov, Alexander N. .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2006, 64 (04) :1091-1094
[9]   Coot:: model-building tools for molecular graphics [J].
Emsley, P ;
Cowtan, K .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :2126-2132
[10]   Telavancin, a multifunctional lipoglycopeptide, disrupts both cell wall synthesis and cell membrane integrity in methicillin-resistant Staphylococcus aureus [J].
Higgins, DL ;
Chang, R ;
Debabov, DV ;
Leung, J ;
Wu, T ;
Krause, KA ;
Sandvik, E ;
Hubbard, JM ;
Kaniga, K ;
Schmidt, DE ;
Gao, QF ;
Cass, RT ;
Karr, DE ;
Benton, BM ;
Humphrey, PP .
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2005, 49 (03) :1127-1134